Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02846

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
2,997,646	+		CCNA_02845	0.19	+0.5
2,997,647	-		CCNA_02845	0.19	+5.4
2,997,654	-		CCNA_02845	0.21	+4.9
2,997,654	-		CCNA_02845	0.21	+5.5
2,997,684	-		CCNA_02845	0.25	+5.3
2,997,753	-		CCNA_02845	0.35	+3.2
2,997,753	-		CCNA_02845	0.35	+4.9
2,997,792	-		CCNA_02845	0.41	+4.2
2,997,800	+		CCNA_02845	0.42	+1.8
2,997,808	-		CCNA_02845	0.43	+2.8
2,997,808	-		CCNA_02845	0.43	+3.6
2,997,877	+		CCNA_02845	0.54	+0.2
2,997,883	+		CCNA_02845	0.55	+1.8
2,997,884	-		CCNA_02845	0.55	+3.3
2,997,884	-		CCNA_02845	0.55	+3.2
2,997,884	-		CCNA_02845	0.55	+3.8
2,997,885	-		CCNA_02845	0.55	+3.0
2,997,892	+		CCNA_02845	0.56	+7.6
2,997,930	+		CCNA_02845	0.62	-0.8
2,997,938	-		CCNA_02845	0.63	+0.8
2,997,965	-		CCNA_02845	0.67	+3.6
2,997,994	+		CCNA_02845	0.71	+0.5
2,997,995	-		CCNA_02845	0.71	-1.1
2,998,001	-		CCNA_02845	0.72	+1.9
2,998,001	-		CCNA_02845	0.72	+1.8
2,998,002	-		CCNA_02845	0.72	+2.1
2,998,002	-		CCNA_02845	0.72	-0.2
2,998,004	+		CCNA_02845	0.73	+0.8
2,998,012	-		CCNA_02845	0.74	+4.1
2,998,070	-		CCNA_02845	0.82	+4.5
2,998,077	-		CCNA_02845	0.83	+5.3
2,998,124	+				+0.8
2,998,132	-				+4.7
2,998,236	+				-0.0
2,998,299	+				-0.9
2,998,306	-				-0.8
2,998,367	+				+1.0
2,998,382	-				-0.3
2,998,385	+				-1.7
2,998,385	+				+0.4
2,998,390	+				-0.2
2,998,392	-				+0.5
2,998,398	-				+0.6
2,998,408	+				+1.2
2,998,416	-				-0.4
2,998,463	-				-0.6
2,998,463	-				+0.0
2,998,507	+				-0.5
2,998,517	-				+1.0
2,998,564	-				+0.8
2,998,612	+				-0.5
2,998,620	-				+1.1
2,998,621	+				+0.8
2,998,650	-				+0.1
2,998,651	+				+0.2
2,998,651	+				+0.8
2,998,687	-				-1.2
2,998,687	-				-0.2
2,998,687	-				-0.4
2,998,716	-				+0.1
2,998,756	-				-0.9
2,998,774	+				+0.5
2,998,779	+				+0.5
2,998,787	+				-0.9
2,998,787	-				+0.8
2,998,789	-				-0.1
2,998,795	-		CCNA_02846	0.10	+1.0
2,998,795	-		CCNA_02846	0.10	+1.8
2,998,795	-		CCNA_02846	0.10	-1.3
2,998,809	-		CCNA_02846	0.11	-1.0
2,998,847	+		CCNA_02846	0.14	+1.2
2,998,855	-		CCNA_02846	0.14	-0.2
2,998,855	-		CCNA_02846	0.14	-0.4
2,998,855	-		CCNA_02846	0.14	-1.2
2,998,855	-		CCNA_02846	0.14	-0.9
2,998,868	-		CCNA_02846	0.15	-1.5
2,998,899	+		CCNA_02846	0.17	+1.2
2,998,907	-		CCNA_02846	0.17	-1.1
2,998,907	-		CCNA_02846	0.17	-1.5
2,998,911	+		CCNA_02846	0.18	-1.1
2,998,911	+		CCNA_02846	0.18	-0.9
2,998,911	+		CCNA_02846	0.18	-1.2
2,998,911	+		CCNA_02846	0.18	-2.2
2,998,914	-		CCNA_02846	0.18	-0.6
2,998,966	+		CCNA_02846	0.21	-0.9
2,998,966	+		CCNA_02846	0.21	+1.2
2,998,974	-		CCNA_02846	0.22	-1.7
2,998,974	-		CCNA_02846	0.22	+0.1
2,998,975	-		CCNA_02846	0.22	+0.0
2,999,012	-		CCNA_02846	0.24	-2.9
2,999,123	-		CCNA_02846	0.31	-1.3
2,999,123	-		CCNA_02846	0.31	-1.8
2,999,123	-		CCNA_02846	0.31	-1.4
2,999,175	-		CCNA_02846	0.34	-1.8
2,999,183	-		CCNA_02846	0.35	-1.2
2,999,210	-		CCNA_02846	0.36	-0.3
2,999,257	-		CCNA_02846	0.39	-1.0
2,999,284	-		CCNA_02846	0.41	-0.9
2,999,297	-		CCNA_02846	0.42	-2.4
2,999,297	-		CCNA_02846	0.42	-2.1
2,999,307	-		CCNA_02846	0.42	-1.1
2,999,307	-		CCNA_02846	0.42	-1.4
2,999,341	-		CCNA_02846	0.45	-1.2
2,999,418	-		CCNA_02846	0.49	-2.4
2,999,620	+		CCNA_02846	0.62	+1.2
2,999,650	+		CCNA_02846	0.64	-0.9
2,999,652	-		CCNA_02846	0.64	+0.4
2,999,657	+		CCNA_02846	0.64	+0.5
2,999,657	+		CCNA_02846	0.64	-0.2
2,999,657	+		CCNA_02846	0.64	+0.8
2,999,657	+		CCNA_02846	0.64	-0.0
2,999,665	-		CCNA_02846	0.65	-2.1
2,999,677	-		CCNA_02846	0.66	-2.0
2,999,677	-		CCNA_02846	0.66	+0.1
2,999,678	+		CCNA_02846	0.66	-0.5
2,999,704	-		CCNA_02846	0.67	-0.9
2,999,729	-		CCNA_02846	0.69	-0.7
2,999,756	+		CCNA_02846	0.71	+0.8
2,999,764	-		CCNA_02846	0.71	-2.3
2,999,829	-		CCNA_02846	0.75	-0.7
2,999,855	-		CCNA_02846	0.77	-1.3
2,999,855	-		CCNA_02846	0.77	-2.0
2,999,920	-		CCNA_02846	0.81	-0.5
2,999,924	-		CCNA_02846	0.81	-0.5
2,999,983	-		CCNA_02846	0.85	-2.7
2,999,983	-		CCNA_02846	0.85	-2.2
3,000,013	+		CCNA_02846	0.87	+2.8
3,000,104	+				-0.2
3,000,104	+				+1.8
3,000,112	-				-1.3
3,000,159	-				-2.2
3,000,159	-				-2.6
3,000,166	+				-0.5
3,000,174	-				-0.2
3,000,267	-				-1.4
3,000,267	-				-1.3
3,000,298	-				-0.6
3,000,329	+				-0.9
3,000,329	-				-0.2
3,000,329	-				-0.2
3,000,329	-				-1.4
3,000,329	-				+0.5
3,000,337	-				+0.1
3,000,461	-		CCNA_02847	0.13	+0.5
3,000,630	-		CCNA_02847	0.50	+0.8
3,000,635	-		CCNA_02847	0.51	+1.8
3,000,642	-		CCNA_02847	0.53	+0.8
3,000,642	-		CCNA_02847	0.53	+1.2
3,000,642	-		CCNA_02847	0.53	+0.2
3,000,642	-		CCNA_02847	0.53	-1.1
3,000,712	-		CCNA_02847	0.68	+0.8
3,000,730	+		CCNA_02847	0.72	+0.2
3,000,730	+		CCNA_02847	0.72	-1.0
3,000,730	+		CCNA_02847	0.72	+2.8
3,000,730	+		CCNA_02847	0.72	+0.2
3,000,731	-		CCNA_02847	0.73	+1.2
3,000,738	-		CCNA_02847	0.74	-0.0
3,000,738	-		CCNA_02847	0.74	+0.4
3,000,738	-		CCNA_02847	0.74	+1.8
3,000,738	-		CCNA_02847	0.74	-0.8
3,000,738	-		CCNA_02847	0.74	+0.6
3,000,738	-		CCNA_02847	0.74	-1.3
3,000,738	-		CCNA_02847	0.74	+0.2
3,000,738	-		CCNA_02847	0.74	+0.5
3,000,738	-		CCNA_02847	0.74	-0.0
3,000,738	-		CCNA_02847	0.74	+0.3
3,000,796	-		CCNA_02847	0.87	+0.5
3,000,828	+				+1.8
3,000,834	-				-0.5
3,000,836	-				+0.5
3,000,838	+				+1.2
3,000,857	-				+0.1
3,000,857	-				-0.2
3,000,867	-				+0.6
3,000,970	+				+0.5
3,000,978	-				+0.5
3,000,978	-				+2.4
3,000,988	-				+0.9
3,001,007	+				+1.8
3,001,007	-				-0.0
3,001,044	-				+1.0
3,001,075	+		CCNA_02848	0.11	-0.4
3,001,138	-		CCNA_02848	0.14	+0.8
3,001,143	-		CCNA_02848	0.15	-1.4
3,001,219	+		CCNA_02848	0.19	+0.5