Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02811 and CCNA_02812 are separated by 161 nucleotides CCNA_02812 and CCNA_02813 overlap by 4 nucleotides CCNA_02813 and CCNA_02814 overlap by 4 nucleotides
CCNA_02811: CCNA_02811 - heavy metal translocating P-type ATPase, at 2,967,624 to 2,969,657
_02811
CCNA_02812: CCNA_02812 - glutaredoxin, at 2,969,819 to 2,970,106
_02812
CCNA_02813: CCNA_02813 - transposase, at 2,970,103 to 2,970,537
_02813
CCNA_02814: CCNA_02814 - transposase, at 2,970,534 to 2,971,514
_02814
Position (kb)
2969
2970
2971 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2968.835 kb on + strand, within CCNA_02811 at 2968.839 kb on - strand, within CCNA_02811 at 2968.841 kb on + strand, within CCNA_02811 at 2968.841 kb on + strand, within CCNA_02811 at 2968.972 kb on + strand, within CCNA_02811 at 2968.972 kb on + strand, within CCNA_02811 at 2968.980 kb on - strand, within CCNA_02811 at 2968.980 kb on - strand, within CCNA_02811 at 2969.011 kb on - strand, within CCNA_02811 at 2969.015 kb on - strand, within CCNA_02811 at 2969.046 kb on + strand, within CCNA_02811 at 2969.053 kb on + strand, within CCNA_02811 at 2969.054 kb on - strand, within CCNA_02811 at 2969.054 kb on - strand, within CCNA_02811 at 2969.054 kb on - strand, within CCNA_02811 at 2969.054 kb on - strand, within CCNA_02811 at 2969.075 kb on - strand, within CCNA_02811 at 2969.103 kb on + strand, within CCNA_02811 at 2969.105 kb on - strand, within CCNA_02811 at 2969.105 kb on - strand, within CCNA_02811 at 2969.117 kb on + strand, within CCNA_02811 at 2969.164 kb on + strand at 2969.229 kb on - strand, within CCNA_02811 at 2969.233 kb on + strand, within CCNA_02811 at 2969.241 kb on - strand, within CCNA_02811 at 2969.255 kb on + strand, within CCNA_02811 at 2969.343 kb on + strand, within CCNA_02811 at 2969.391 kb on + strand, within CCNA_02811 at 2969.391 kb on + strand, within CCNA_02811 at 2969.399 kb on + strand, within CCNA_02811 at 2969.399 kb on - strand, within CCNA_02811 at 2969.439 kb on + strand, within CCNA_02811 at 2969.509 kb on + strand at 2969.515 kb on + strand at 2969.519 kb on + strand at 2969.522 kb on - strand at 2969.537 kb on + strand at 2969.574 kb on + strand at 2969.577 kb on - strand at 2969.619 kb on + strand at 2969.620 kb on - strand at 2969.620 kb on - strand at 2969.627 kb on - strand at 2969.635 kb on - strand at 2969.677 kb on + strand at 2969.698 kb on + strand at 2969.714 kb on + strand at 2969.714 kb on + strand at 2969.714 kb on + strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.739 kb on + strand at 2969.758 kb on - strand at 2969.817 kb on + strand at 2969.856 kb on + strand, within CCNA_02812 at 2969.863 kb on - strand, within CCNA_02812 at 2969.864 kb on - strand, within CCNA_02812 at 2969.868 kb on + strand, within CCNA_02812 at 2969.873 kb on + strand, within CCNA_02812 at 2969.900 kb on + strand, within CCNA_02812 at 2969.908 kb on - strand, within CCNA_02812 at 2969.916 kb on - strand, within CCNA_02812 at 2969.952 kb on + strand, within CCNA_02812 at 2969.959 kb on - strand at 2969.970 kb on - strand, within CCNA_02812 at 2969.990 kb on + strand, within CCNA_02812 at 2970.025 kb on + strand, within CCNA_02812 at 2970.034 kb on + strand, within CCNA_02812 at 2970.046 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.061 kb on + strand, within CCNA_02812 at 2970.064 kb on - strand, within CCNA_02812 at 2970.064 kb on - strand, within CCNA_02812 at 2970.074 kb on - strand, within CCNA_02812 at 2970.109 kb on - strand at 2970.122 kb on - strand at 2970.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 2,968,835 + CCNA_02811 0.60 -0.8 2,968,839 - CCNA_02811 0.60 -1.1 2,968,841 + CCNA_02811 0.60 +0.4 2,968,841 + CCNA_02811 0.60 +0.6 2,968,972 + CCNA_02811 0.66 +0.3 2,968,972 + CCNA_02811 0.66 -1.0 2,968,980 - CCNA_02811 0.67 +2.8 2,968,980 - CCNA_02811 0.67 -0.7 2,969,011 - CCNA_02811 0.68 -0.4 2,969,015 - CCNA_02811 0.68 +1.8 2,969,046 + CCNA_02811 0.70 -1.8 2,969,053 + CCNA_02811 0.70 -0.1 2,969,054 - CCNA_02811 0.70 +1.8 2,969,054 - CCNA_02811 0.70 -0.2 2,969,054 - CCNA_02811 0.70 -0.6 2,969,054 - CCNA_02811 0.70 +0.8 2,969,075 - CCNA_02811 0.71 +0.6 2,969,103 + CCNA_02811 0.73 +1.8 2,969,105 - CCNA_02811 0.73 +0.4 2,969,105 - CCNA_02811 0.73 -1.2 2,969,117 + CCNA_02811 0.73 -0.4 2,969,164 + +2.8 2,969,229 - CCNA_02811 0.79 -0.4 2,969,233 + CCNA_02811 0.79 -1.5 2,969,241 - CCNA_02811 0.79 -0.7 2,969,255 + CCNA_02811 0.80 -0.3 2,969,343 + CCNA_02811 0.85 +0.6 2,969,391 + CCNA_02811 0.87 -0.4 2,969,391 + CCNA_02811 0.87 +0.2 2,969,399 + CCNA_02811 0.87 -1.3 2,969,399 - CCNA_02811 0.87 -0.0 2,969,439 + CCNA_02811 0.89 -1.4 2,969,509 + -0.2 2,969,515 + -1.1 2,969,519 + -1.0 2,969,522 - +2.8 2,969,537 + +1.8 2,969,574 + -1.2 2,969,577 - +0.8 2,969,619 + -0.4 2,969,620 - +0.2 2,969,620 - +1.2 2,969,627 - +0.4 2,969,635 - +0.4 2,969,677 + +1.4 2,969,698 + -0.6 2,969,714 + -0.8 2,969,714 + +0.4 2,969,714 + +0.8 2,969,722 - +0.4 2,969,722 - +1.2 2,969,722 - -0.2 2,969,722 - -0.0 2,969,739 + +2.2 2,969,758 - -0.2 2,969,817 + -0.7 2,969,856 + CCNA_02812 0.13 +0.6 2,969,863 - CCNA_02812 0.15 +0.2 2,969,864 - CCNA_02812 0.16 -0.7 2,969,868 + CCNA_02812 0.17 -0.4 2,969,873 + CCNA_02812 0.19 -1.1 2,969,900 + CCNA_02812 0.28 +3.2 2,969,908 - CCNA_02812 0.31 +0.8 2,969,916 - CCNA_02812 0.34 +1.2 2,969,952 + CCNA_02812 0.46 -0.0 2,969,959 - +1.8 2,969,970 - CCNA_02812 0.52 +1.2 2,969,990 + CCNA_02812 0.59 +0.6 2,970,025 + CCNA_02812 0.72 +2.8 2,970,034 + CCNA_02812 0.75 +0.2 2,970,046 + CCNA_02812 0.79 +0.2 2,970,056 + CCNA_02812 0.82 +0.2 2,970,056 + CCNA_02812 0.82 -0.4 2,970,056 + CCNA_02812 0.82 +1.2 2,970,056 + CCNA_02812 0.82 -2.0 2,970,061 + CCNA_02812 0.84 +1.8 2,970,064 - CCNA_02812 0.85 +1.8 2,970,064 - CCNA_02812 0.85 +1.8 2,970,074 - CCNA_02812 0.89 +0.4 2,970,109 - -1.0 2,970,122 - +0.8 2,970,122 - +2.8
Or see this region's nucleotide sequence