Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01822

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,947,391	-		CCNA_01820	0.87	+0.4
1,947,396	+		CCNA_01820	0.87	+0.6
1,947,401	+		CCNA_01820	0.88	+0.4
1,947,409	-		CCNA_01820	0.88	+1.8
1,947,424	-		CCNA_01820	0.90	+0.3
1,947,451	-				+0.1
1,947,498	+				+0.5
1,947,499	-				-0.3
1,947,542	+				+0.4
1,947,542	+				+1.0
1,947,543	-				+0.8
1,947,550	-				-0.5
1,947,550	-				-0.7
1,947,564	+				+0.0
1,947,587	-				-0.9
1,947,587	-				-0.0
1,947,625	+				-0.8
1,947,625	+				+1.8
1,947,633	-				-1.3
1,947,633	-				-2.0
1,947,706	+		CCNA_01821	0.18	-0.7
1,947,760	+		CCNA_01821	0.24	-0.0
1,947,912	-		CCNA_01821	0.43	+3.8
1,947,963	-		CCNA_01821	0.49	-0.0
1,947,968	-		CCNA_01821	0.49	-0.4
1,947,968	-		CCNA_01821	0.49	-1.5
1,947,974	-		CCNA_01821	0.50	-0.2
1,947,980	+		CCNA_01821	0.51	-0.4
1,947,988	-		CCNA_01821	0.52	-0.4
1,948,012	+		CCNA_01821	0.55	+0.6
1,948,025	-		CCNA_01821	0.56	-1.1
1,948,033	-		CCNA_01821	0.57	-1.6
1,948,059	-		CCNA_01821	0.60	-0.0
1,948,088	-		CCNA_01821	0.64	-0.9
1,948,114	-		CCNA_01821	0.67	-0.0
1,948,156	+		CCNA_01821	0.72	-1.2
1,948,166	+		CCNA_01821	0.73	-0.1
1,948,176	+		CCNA_01821	0.74	+0.6
1,948,176	+		CCNA_01821	0.74	-0.9
1,948,176	+		CCNA_01821	0.74	-0.0
1,948,176	+		CCNA_01821	0.74	-0.4
1,948,179	-		CCNA_01821	0.75	+0.8
1,948,184	-		CCNA_01821	0.75	+1.8
1,948,220	+		CCNA_01821	0.80	+0.5
1,948,262	+		CCNA_01821	0.85	+0.8
1,948,275	-		CCNA_01821	0.86	+0.1
1,948,306	+				+1.2
1,948,327	+				+1.8
1,948,402	+				+0.5
1,948,409	+				-0.7
1,948,518	+		CCNA_01822	0.12	-0.4
1,948,525	-		CCNA_01822	0.12	+0.5
1,948,559	-		CCNA_01822	0.15	+0.8
1,948,559	-		CCNA_01822	0.15	-0.8
1,948,589	+		CCNA_01822	0.17	+2.8
1,948,646	+		CCNA_01822	0.21	+0.8
1,948,646	+		CCNA_01822	0.21	-0.7
1,948,669	+		CCNA_01822	0.23	-0.7
1,948,674	+		CCNA_01822	0.23	+0.8
1,948,676	-		CCNA_01822	0.23	+0.9
1,948,677	-		CCNA_01822	0.23	-1.5
1,948,677	-		CCNA_01822	0.23	-0.8
1,948,677	-		CCNA_01822	0.23	-0.1
1,948,677	-		CCNA_01822	0.23	-0.2
1,948,682	-		CCNA_01822	0.23	-2.0
1,948,701	+		CCNA_01822	0.25	-0.7
1,948,712	+		CCNA_01822	0.26	-1.0
1,948,720	-		CCNA_01822	0.26	+1.8
1,948,767	+		CCNA_01822	0.30	-0.8
1,948,770	-		CCNA_01822	0.30	-0.3
1,948,802	+		CCNA_01822	0.32	-0.8
1,948,802	+		CCNA_01822	0.32	-0.0
1,948,802	+		CCNA_01822	0.32	+0.8
1,948,810	-		CCNA_01822	0.33	+1.4
1,948,819	+		CCNA_01822	0.33	-0.2
1,948,819	+		CCNA_01822	0.33	+0.2
1,948,821	+		CCNA_01822	0.33	+0.2
1,948,821	+		CCNA_01822	0.33	-1.4
1,948,827	-		CCNA_01822	0.34	+0.8
1,948,829	-		CCNA_01822	0.34	-0.7
1,948,829	-		CCNA_01822	0.34	-0.0
1,948,836	+		CCNA_01822	0.34	-0.2
1,948,848	+		CCNA_01822	0.35	+0.8
1,948,857	-		CCNA_01822	0.36	-0.2
1,948,904	+		CCNA_01822	0.39	+0.2
1,948,912	-		CCNA_01822	0.40	-0.4
1,948,912	-		CCNA_01822	0.40	+0.8
1,948,917	-		CCNA_01822	0.40	-1.3
1,948,949	-		CCNA_01822	0.42	-2.2
1,948,955	-		CCNA_01822	0.43	-1.7
1,948,973	-		CCNA_01822	0.44	-0.8
1,948,975	-		CCNA_01822	0.44	-0.2
1,948,977	+		CCNA_01822	0.44	+1.8
1,948,979	-		CCNA_01822	0.45	-0.5
1,948,984	+		CCNA_01822	0.45	-0.0
1,948,984	+		CCNA_01822	0.45	-0.2
1,948,984	+		CCNA_01822	0.45	-1.3
1,948,984	+		CCNA_01822	0.45	-0.5
1,948,992	-		CCNA_01822	0.45	+1.2
1,948,992	-		CCNA_01822	0.45	+1.8
1,948,992	-		CCNA_01822	0.45	-1.8
1,948,992	-		CCNA_01822	0.45	+1.8
1,948,992	-		CCNA_01822	0.45	-1.5
1,948,992	-		CCNA_01822	0.45	+0.5
1,948,992	-		CCNA_01822	0.45	-0.4
1,949,059	-		CCNA_01822	0.50	+1.2
1,949,067	+		CCNA_01822	0.51	-2.4
1,949,124	-		CCNA_01822	0.55	+0.2
1,949,155	-		CCNA_01822	0.57	-0.1
1,949,195	+		CCNA_01822	0.60	-0.8
1,949,203	-		CCNA_01822	0.60	-1.1
1,949,220	-		CCNA_01822	0.62	+1.2
1,949,236	+		CCNA_01822	0.63	-0.0
1,949,236	+		CCNA_01822	0.63	-0.5
1,949,236	+		CCNA_01822	0.63	-0.2
1,949,236	+		CCNA_01822	0.63	-0.7
1,949,236	+		CCNA_01822	0.63	+2.8
1,949,236	+		CCNA_01822	0.63	-1.2
1,949,244	-		CCNA_01822	0.63	-0.5
1,949,244	-		CCNA_01822	0.63	-2.4
1,949,244	-		CCNA_01822	0.63	-1.6
1,949,244	-		CCNA_01822	0.63	-0.2
1,949,244	-		CCNA_01822	0.63	-0.1
1,949,244	-		CCNA_01822	0.63	+1.2
1,949,244	-		CCNA_01822	0.63	-0.0
1,949,244	-		CCNA_01822	0.63	+2.8
1,949,244	-		CCNA_01822	0.63	+1.2
1,949,244	-		CCNA_01822	0.63	-1.3
1,949,256	+		CCNA_01822	0.64	+0.8
1,949,313	+		CCNA_01822	0.68	+0.8
1,949,321	+		CCNA_01822	0.69	-1.2
1,949,321	+		CCNA_01822	0.69	-0.5
1,949,321	-		CCNA_01822	0.69	-0.4
1,949,322	-		CCNA_01822	0.69	-1.5
1,949,329	-		CCNA_01822	0.69	-1.4
1,949,336	-		CCNA_01822	0.70	-0.2
1,949,346	+		CCNA_01822	0.70	+0.8
1,949,354	-		CCNA_01822	0.71	-1.9
1,949,368	+		CCNA_01822	0.72	-0.9
1,949,368	+		CCNA_01822	0.72	-1.5
1,949,368	+		CCNA_01822	0.72	+0.8
1,949,368	+		CCNA_01822	0.72	+0.2
1,949,368	+				+0.5
1,949,368	+		CCNA_01822	0.72	+0.2
1,949,368	+		CCNA_01822	0.72	-0.0
1,949,368	+		CCNA_01822	0.72	-1.8
1,949,368	+		CCNA_01822	0.72	+1.5
1,949,376	-		CCNA_01822	0.73	-0.8
1,949,376	-		CCNA_01822	0.73	-1.0
1,949,376	-		CCNA_01822	0.73	-2.6
1,949,376	-		CCNA_01822	0.73	+0.8
1,949,376	-		CCNA_01822	0.73	-0.5
1,949,376	-		CCNA_01822	0.73	-0.5
1,949,376	-		CCNA_01822	0.73	+0.2
1,949,398	+		CCNA_01822	0.74	+0.8
1,949,452	+		CCNA_01822	0.78	+1.8
1,949,452	+		CCNA_01822	0.78	-0.7
1,949,452	+		CCNA_01822	0.78	-0.8
1,949,452	+		CCNA_01822	0.78	-0.4
1,949,460	-		CCNA_01822	0.79	-2.5
1,949,460	-		CCNA_01822	0.79	-0.1
1,949,460	-		CCNA_01822	0.79	-1.2
1,949,460	-		CCNA_01822	0.79	+0.9
1,949,460	-		CCNA_01822	0.79	-1.2
1,949,501	+		CCNA_01822	0.81	+0.8
1,949,586	-		CCNA_01822	0.87	-0.3
1,949,609	+		CCNA_01822	0.89	+0.2
1,949,635	-				+2.8
1,949,649	-				-0.2
1,949,649	-				+0.1
1,949,651	+				+0.8
1,949,657	+				+0.2
1,949,678	-				-1.1
1,949,684	-				+0.8
1,949,744	-				-0.7
1,949,763	+				-0.3
1,949,771	-				-0.8
1,949,851	+				-0.9
1,949,851	+				-1.7
1,949,859	-				+1.2
1,949,911	+				-0.5
1,949,911	+				+0.2
1,949,911	+				+0.3
1,949,911	+				+0.8
1,949,911	+				-0.7
1,949,952	-				+1.8
1,949,987	-				-0.2
1,950,004	-				-0.2
1,950,100	+		CCNA_01823	0.27	-0.2
1,950,138	-		CCNA_01823	0.45	-0.7
1,950,157	-		CCNA_01823	0.53	-0.9
1,950,314	+				-1.7
1,950,314	+				-0.6
1,950,332	+				+0.8
1,950,340	-				-0.7
1,950,371	+		CCNA_01824	0.11	-0.7
1,950,371	+		CCNA_01824	0.11	-1.3
1,950,379	-		CCNA_01824	0.13	+0.8
1,950,381	+		CCNA_01824	0.14	-1.0
1,950,381	+		CCNA_01824	0.14	-0.0
1,950,389	-		CCNA_01824	0.16	+0.5
1,950,389	-		CCNA_01824	0.16	-0.0
1,950,438	-		CCNA_01824	0.31	-0.2
1,950,448	-		CCNA_01824	0.34	+1.8
1,950,448	-		CCNA_01824	0.34	+1.8
1,950,450	+		CCNA_01824	0.35	-0.5
1,950,458	-		CCNA_01824	0.37	+0.5
1,950,463	-		CCNA_01824	0.38	+1.2
1,950,463	-		CCNA_01824	0.38	-1.5
1,950,483	-		CCNA_01824	0.44	-0.9
1,950,534	+		CCNA_01824	0.60	-0.4
1,950,551	+		CCNA_01824	0.65	-0.9
1,950,579	+		CCNA_01824	0.73	-1.2
1,950,585	+		CCNA_01824	0.75	+1.2
1,950,593	-		CCNA_01824	0.77	-1.0
1,950,597	+		CCNA_01824	0.78	-0.9
1,950,619	-		CCNA_01824	0.85	+0.2
1,950,619	-		CCNA_01824	0.85	-2.3
1,950,619	-		CCNA_01824	0.85	+0.1
1,950,642	+				-2.0
1,950,656	-				-1.4
1,950,677	-				+0.9
1,950,716	+				-0.4
1,950,749	+				-0.3
1,950,749	+				-0.8
1,950,752	-				-1.9
1,950,752	-				-1.1
1,950,754	+				-0.9