Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01584

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,698,721	-		CCNA_01583	0.19	+1.8
1,698,721	-		CCNA_01583	0.19	-0.6
1,698,762	+		CCNA_01583	0.23	+1.8
1,698,895	-		CCNA_01583	0.36	+0.8
1,699,027	+		CCNA_01583	0.49	+1.8
1,699,036	+				+0.8
1,699,044	+		CCNA_01583	0.50	+1.8
1,699,152	-		CCNA_01583	0.61	+0.5
1,699,164	+		CCNA_01583	0.62	+0.5
1,699,342	-				+0.0
1,699,484	-				-1.6
1,699,484	-				-0.3
1,699,578	-		CCNA_03954	0.89	-1.6
1,699,597	-				-0.6
1,699,607	-				-0.6
1,699,607	-				-0.7
1,699,678	-				-0.6
1,699,726	-				-2.5
1,699,786	-				-0.6
1,699,899	-				-1.4
1,699,939	-		CCNA_01584	0.11	-0.9
1,699,941	+		CCNA_01584	0.11	-0.8
1,699,971	+		CCNA_01584	0.12	+0.8
1,700,000	-		CCNA_01584	0.13	+0.4
1,700,013	+		CCNA_01584	0.14	+0.2
1,700,016	-		CCNA_01584	0.14	-0.5
1,700,021	-		CCNA_01584	0.14	-0.2
1,700,031	-		CCNA_01584	0.14	-1.4
1,700,063	+		CCNA_01584	0.16	+0.2
1,700,086	+		CCNA_01584	0.17	+0.2
1,700,124	+		CCNA_01584	0.18	-0.9
1,700,137	+		CCNA_01584	0.19	-1.5
1,700,139	-		CCNA_01584	0.19	-0.2
1,700,170	-		CCNA_01584	0.20	-1.8
1,700,202	+		CCNA_01584	0.22	+1.0
1,700,232	+		CCNA_01584	0.23	-0.9
1,700,240	-		CCNA_01584	0.23	-0.8
1,700,240	-		CCNA_01584	0.23	-2.1
1,700,244	+		CCNA_01584	0.23	-2.4
1,700,245	-		CCNA_01584	0.23	-0.2
1,700,250	-		CCNA_01584	0.24	-1.7
1,700,269	-		CCNA_01584	0.24	-0.9
1,700,276	+		CCNA_01584	0.25	+0.2
1,700,291	+				+1.2
1,700,299	-		CCNA_01584	0.26	-1.3
1,700,302	+		CCNA_01584	0.26	-1.6
1,700,320	-		CCNA_01584	0.27	-2.4
1,700,375	-		CCNA_01584	0.29	-1.9
1,700,390	-		CCNA_01584	0.30	-2.7
1,700,403	+		CCNA_01584	0.30	+0.8
1,700,411	-		CCNA_01584	0.30	+1.0
1,700,434	+		CCNA_01584	0.31	-0.9
1,700,439	+		CCNA_01584	0.32	+0.8
1,700,441	+		CCNA_01584	0.32	-2.2
1,700,452	-		CCNA_01584	0.32	-1.7
1,700,475	+		CCNA_01584	0.33	+0.0
1,700,483	-		CCNA_01584	0.33	-2.0
1,700,490	-		CCNA_01584	0.34	-1.4
1,700,553	+		CCNA_01584	0.36	-1.7
1,700,561	+		CCNA_01584	0.37	-0.8
1,700,565	-		CCNA_01584	0.37	-2.3
1,700,567	+		CCNA_01584	0.37	-0.2
1,700,569	-		CCNA_01584	0.37	+0.8
1,700,575	-		CCNA_01584	0.37	-3.2
1,700,592	+		CCNA_01584	0.38	-0.3
1,700,643	+		CCNA_01584	0.40	-1.0
1,700,666	+		CCNA_01584	0.41	+0.8
1,700,674	-		CCNA_01584	0.41	-1.7
1,700,692	+		CCNA_01584	0.42	-0.9
1,700,705	+		CCNA_01584	0.43	+0.0
1,700,705	+		CCNA_01584	0.43	+1.2
1,700,707	+		CCNA_01584	0.43	-0.8
1,700,713	-		CCNA_01584	0.43	-0.6
1,700,749	+		CCNA_01584	0.45	+1.0
1,700,862	-		CCNA_01584	0.49	-1.0
1,700,866	-		CCNA_01584	0.49	-0.9
1,700,877	+		CCNA_01584	0.50	+0.8
1,700,878	+		CCNA_01584	0.50	-0.3
1,700,886	-		CCNA_01584	0.50	-0.3
1,700,900	-		CCNA_01584	0.51	+1.8
1,700,900	-		CCNA_01584	0.51	+0.0
1,700,931	-		CCNA_01584	0.52	+2.2
1,700,931	-		CCNA_01584	0.52	-1.7
1,700,959	+		CCNA_01584	0.53	+0.0
1,700,959	+		CCNA_01584	0.53	+1.2
1,700,959	+		CCNA_01584	0.53	-1.4
1,700,967	-		CCNA_01584	0.54	-0.3
1,700,967	-		CCNA_01584	0.54	-0.5
1,700,967	-		CCNA_01584	0.54	-1.2
1,700,967	-		CCNA_01584	0.54	-2.7
1,700,972	-		CCNA_01584	0.54	-1.2
1,701,042	+		CCNA_01584	0.57	+0.2
1,701,047	+		CCNA_01584	0.57	-0.3
1,701,047	+				+1.8
1,701,047	+		CCNA_01584	0.57	+0.2
1,701,047	+		CCNA_01584	0.57	-0.8
1,701,047	+		CCNA_01584	0.57	+0.8
1,701,047	+		CCNA_01584	0.57	-0.1
1,701,047	+		CCNA_01584	0.57	-2.3
1,701,055	-		CCNA_01584	0.57	-0.0
1,701,055	-		CCNA_01584	0.57	-1.8
1,701,055	-		CCNA_01584	0.57	-1.3
1,701,104	-		CCNA_01584	0.59	-1.4
1,701,104	-		CCNA_01584	0.59	+1.8
1,701,119	+		CCNA_01584	0.60	-0.3
1,701,127	-		CCNA_01584	0.60	-0.7
1,701,235	+		CCNA_01584	0.65	-1.3
1,701,243	-		CCNA_01584	0.65	-0.9
1,701,276	+		CCNA_01584	0.67	+0.2
1,701,352	+		CCNA_01584	0.70	-0.2
1,701,385	-		CCNA_01584	0.71	-2.1
1,701,436	+		CCNA_01584	0.73	+0.8
1,701,475	+		CCNA_01584	0.75	+0.2
1,701,475	+		CCNA_01584	0.75	-1.0
1,701,483	-		CCNA_01584	0.75	-2.5
1,701,483	-		CCNA_01584	0.75	-2.0
1,701,483	-		CCNA_01584	0.75	-1.9
1,701,483	-		CCNA_01584	0.75	-1.6
1,701,483	-		CCNA_01584	0.75	-2.0
1,701,507	+		CCNA_01584	0.76	+0.5
1,701,540	+		CCNA_01584	0.78	+0.8
1,701,540	+		CCNA_01584	0.78	+0.0
1,701,549	+		CCNA_01584	0.78	-1.4
1,701,599	+		CCNA_01584	0.80	+0.2
1,701,631	+		CCNA_01584	0.82	-0.5
1,701,639	-		CCNA_01584	0.82	-2.2
1,701,643	+		CCNA_01584	0.82	-1.1
1,701,656	+		CCNA_01584	0.83	+0.5
1,701,657	-		CCNA_01584	0.83	-0.5
1,701,657	-		CCNA_01584	0.83	-1.3
1,701,667	-		CCNA_01584	0.83	+0.4
1,701,717	+		CCNA_01584	0.85	-0.9
1,701,723	+		CCNA_01584	0.85	-0.9
1,701,723	-		CCNA_01584	0.85	+0.4
1,701,725	-		CCNA_01584	0.85	-0.5
1,701,777	-		CCNA_01584	0.88	-0.9
1,701,777	-		CCNA_01584	0.88	-0.8
1,701,796	+		CCNA_01584	0.88	-0.9
1,701,804	-		CCNA_01584	0.89	-0.8
1,701,808	+		CCNA_01584	0.89	+0.2
1,701,809	-		CCNA_01584	0.89	-2.9
1,701,809	-		CCNA_01584	0.89	-1.4
1,701,813	+		CCNA_01584	0.89	-2.5
1,701,818	+		CCNA_01584	0.89	-0.3
1,701,862	-				-1.2
1,701,886	+				-1.5
1,701,886	+				+0.2
1,701,894	-				-2.2
1,701,910	-				-1.1
1,701,957	+				+0.0
1,702,049	-				+1.8
1,702,066	+				+1.2
1,702,066	+				-1.0
1,702,066	+				-1.2
1,702,069	-				+0.4
1,702,072	+				+1.8
1,702,074	-				-1.3
1,702,074	-				-0.2
1,702,074	-				+0.5
1,702,074	-				+1.3
1,702,074	-				+0.0
1,702,074	-				-0.9
1,702,074	-				-1.6
1,702,104	+				+0.2
1,702,122	-				-1.7
1,702,134	+				-0.6
1,702,139	+				+0.0
1,702,186	+				+0.9
1,702,225	+				+0.3
1,702,226	+				-0.6
1,702,226	-				-0.8
1,702,306	-				+0.7
1,702,317	+				+0.5
1,702,325	-				-0.2
1,702,325	-				-1.4
1,702,377	+				-0.2
1,702,415	-				+0.8
1,702,415	-				-0.6
1,702,420	-				+0.2
1,702,429	-				+0.3
1,702,481	-				-0.6
1,702,518	-				+1.2
1,702,546	+				-1.8
1,702,546	+				-1.0
1,702,553	-				-0.3
1,702,601	-		CCNA_01585	0.12	+0.8
1,702,638	+		CCNA_01585	0.14	+0.8
1,702,638	+		CCNA_01585	0.14	-0.9
1,702,638	+		CCNA_01585	0.14	+0.0
1,702,703	-		CCNA_01585	0.17	-0.1
1,702,739	-		CCNA_01585	0.18	-1.3
1,702,740	-		CCNA_01585	0.18	+1.2
1,702,756	+		CCNA_01585	0.19	-0.8
1,702,756	-		CCNA_01585	0.19	+1.2
1,702,761	+		CCNA_01585	0.19	-1.2
1,702,764	-		CCNA_01585	0.20	+1.2
1,702,856	-		CCNA_01585	0.24	-0.3
1,702,880	+		CCNA_01585	0.25	+1.2
1,702,980	+		CCNA_01585	0.30	-0.5
1,702,995	+		CCNA_01585	0.31	+1.8
1,703,021	-		CCNA_01585	0.32	+1.8
1,703,046	+		CCNA_01585	0.33	-0.2
1,703,046	+		CCNA_01585	0.33	+1.8
1,703,046	+		CCNA_01585	0.33	+0.0
1,703,046	+		CCNA_01585	0.33	+0.2
1,703,046	+		CCNA_01585	0.33	+0.0
1,703,046	+		CCNA_01585	0.33	-0.2
1,703,046	+		CCNA_01585	0.33	+0.8
1,703,046	+		CCNA_01585	0.33	+0.2
1,703,046	+		CCNA_01585	0.33	+0.8
1,703,054	-		CCNA_01585	0.34	-0.6
1,703,054	-		CCNA_01585	0.34	+0.2
1,703,054	-		CCNA_01585	0.34	+0.5
1,703,054	-		CCNA_01585	0.34	+0.5
1,703,054	-		CCNA_01585	0.34	-0.9
1,703,054	-		CCNA_01585	0.34	+0.0
1,703,054	-		CCNA_01585	0.34	+1.2
1,703,054	-		CCNA_01585	0.34	-0.3
1,703,067	+		CCNA_01585	0.34	+1.2