Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01580

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,695,894	-		CCNA_01579	0.39	+0.8
1,695,904	-		CCNA_01579	0.40	+2.8
1,695,948	+		CCNA_01579	0.43	+0.2
1,695,961	-		CCNA_01579	0.44	+0.2
1,695,996	+		CCNA_01579	0.46	+0.4
1,695,996	+		CCNA_01579	0.46	+0.1
1,695,996	+		CCNA_01579	0.46	-0.5
1,695,996	+		CCNA_01579	0.46	-2.3
1,695,996	+		CCNA_01579	0.46	-0.2
1,695,996	+		CCNA_01579	0.46	-0.5
1,695,996	+		CCNA_01579	0.46	-0.9
1,695,996	+		CCNA_01579	0.46	-1.3
1,695,996	+		CCNA_01579	0.46	+1.2
1,695,997	+		CCNA_01579	0.46	+0.8
1,696,001	+		CCNA_01579	0.46	-0.8
1,696,001	+		CCNA_01579	0.46	+0.4
1,696,001	+		CCNA_01579	0.46	-0.8
1,696,001	+		CCNA_01579	0.46	-0.6
1,696,001	+		CCNA_01579	0.46	+1.2
1,696,001	+		CCNA_01579	0.46	+1.2
1,696,004	-		CCNA_01579	0.46	+1.8
1,696,009	-		CCNA_01579	0.47	-2.1
1,696,020	+		CCNA_01579	0.48	-0.6
1,696,044	-		CCNA_01579	0.49	+1.8
1,696,077	+		CCNA_01579	0.51	+0.8
1,696,077	+		CCNA_01579	0.51	-1.6
1,696,077	+		CCNA_01579	0.51	+0.8
1,696,082	+		CCNA_01579	0.52	+0.2
1,696,085	-		CCNA_01579	0.52	+0.0
1,696,085	-		CCNA_01579	0.52	-0.5
1,696,085	-		CCNA_01579	0.52	+0.8
1,696,107	+		CCNA_01579	0.53	+1.8
1,696,153	-		CCNA_01579	0.56	+0.5
1,696,154	-		CCNA_01579	0.56	-2.0
1,696,237	+		CCNA_01579	0.62	-1.6
1,696,242	+		CCNA_01579	0.62	+0.5
1,696,319	-		CCNA_01579	0.67	+2.8
1,696,346	+		CCNA_01579	0.69	+1.0
1,696,346	+		CCNA_01579	0.69	-0.1
1,696,364	+		CCNA_01579	0.70	+0.2
1,696,417	-		CCNA_01579	0.74	-0.8
1,696,444	-		CCNA_01579	0.76	+0.7
1,696,498	+		CCNA_01579	0.79	-1.6
1,696,506	-		CCNA_01579	0.80	-1.5
1,696,512	-		CCNA_01579	0.80	-1.9
1,696,576	+		CCNA_01579	0.84	-2.1
1,696,595	+		CCNA_01579	0.86	-0.0
1,696,675	+				-0.5
1,696,675	+				-0.6
1,696,675	+				-0.7
1,696,679	-				+2.8
1,696,712	+				-1.1
1,696,712	+				-0.2
1,696,720	-				-2.7
1,696,770	+				-0.3
1,696,837	+				+0.2
1,696,837	+				+2.8
1,696,837	+				+0.4
1,696,837	+				-1.7
1,696,849	+				+1.3
1,696,990	+		CCNA_01580	0.16	+3.7
1,696,995	-		CCNA_01580	0.17	-0.1
1,696,997	+		CCNA_01580	0.18	+0.3
1,697,053	-		CCNA_01580	0.26	-1.3
1,697,065	+		CCNA_01580	0.28	+1.1
1,697,091	+		CCNA_01580	0.32	+3.2
1,697,091	+		CCNA_01580	0.32	+4.2
1,697,091	+		CCNA_01580	0.32	+0.8
1,697,094	-		CCNA_01580	0.32	+0.5
1,697,098	+		CCNA_01580	0.33	+0.5
1,697,099	-		CCNA_01580	0.33	+1.4
1,697,147	-		CCNA_01580	0.41	-0.9
1,697,159	+		CCNA_01580	0.42	+1.0
1,697,182	+		CCNA_01580	0.46	+0.1
1,697,182	+		CCNA_01580	0.46	+0.1
1,697,216	+		CCNA_01580	0.51	+4.1
1,697,238	+		CCNA_01580	0.55	+0.5
1,697,246	-		CCNA_01580	0.56	+0.8
1,697,246	-		CCNA_01580	0.56	+0.2
1,697,246	-		CCNA_01580	0.56	+0.8
1,697,270	+		CCNA_01580	0.59	+0.7
1,697,277	+		CCNA_01580	0.61	+0.2
1,697,278	-		CCNA_01580	0.61	+2.8
1,697,278	-		CCNA_01580	0.61	+2.8
1,697,545	+				+0.2
1,697,584	+				-0.7
1,697,612	-				+1.8
1,697,634	+				-0.3
1,697,634	+				-1.4
1,697,644	-				+0.4
1,697,644	-				-0.5
1,697,651	+				-0.5
1,697,669	+				-1.2
1,697,760	+		CCNA_01581	0.35	+1.2
1,697,773	-		CCNA_01581	0.39	+1.2
1,697,829	-		CCNA_01581	0.56	+0.2
1,697,850	-		CCNA_01581	0.62	-0.8
1,697,850	-		CCNA_01581	0.62	-0.2
1,698,002	-				-1.5
1,698,018	+				-1.0
1,698,018	+				-0.6
1,698,126	+		CCNA_01582	0.10	-1.4
1,698,136	+		CCNA_01582	0.13	+0.0
1,698,237	-		CCNA_01582	0.41	+0.2
1,698,389	-		CCNA_01582	0.83	+1.2
1,698,396	-		CCNA_01582	0.85	+1.1
1,698,406	+		CCNA_01582	0.87	-0.9
1,698,421	+				+0.2
1,698,429	-				-0.2