Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01506

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,615,857	+		CCNA_01504	0.74	+2.2
1,615,857	+		CCNA_01504	0.74	-0.0
1,615,857	+		CCNA_01504	0.74	+0.5
1,615,865	-		CCNA_01504	0.75	-0.0
1,615,865	-		CCNA_01504	0.75	-0.5
1,615,865	-		CCNA_01504	0.75	-0.1
1,615,865	-		CCNA_01504	0.75	-0.4
1,615,865	-		CCNA_01504	0.75	-0.2
1,615,878	-		CCNA_01504	0.75	-1.2
1,615,914	+		CCNA_01504	0.77	+0.2
1,615,936	-		CCNA_01504	0.78	+1.8
1,615,945	-		CCNA_01504	0.79	-0.4
1,615,945	-		CCNA_01504	0.79	-1.2
1,615,961	+		CCNA_01504	0.79	+0.8
1,615,961	+		CCNA_01504	0.79	+2.8
1,615,961	+		CCNA_01504	0.79	-0.2
1,615,969	-		CCNA_01504	0.80	-1.4
1,615,969	-		CCNA_01504	0.80	-0.5
1,615,969	-		CCNA_01504	0.80	+0.6
1,616,046	-		CCNA_01504	0.83	-1.0
1,616,060	+		CCNA_01504	0.84	+1.2
1,616,060	+		CCNA_01504	0.84	-1.0
1,616,068	-		CCNA_01504	0.84	-1.3
1,616,068	-		CCNA_01504	0.84	-1.6
1,616,068	-		CCNA_01504	0.84	-0.0
1,616,068	-		CCNA_01504	0.84	+0.0
1,616,068	-		CCNA_01504	0.84	-1.2
1,616,068	-		CCNA_01504	0.84	-1.1
1,616,070	-		CCNA_01504	0.85	-1.8
1,616,097	+		CCNA_01504	0.86	-0.4
1,616,105	-		CCNA_01504	0.86	+1.8
1,616,105	-		CCNA_01504	0.86	+2.8
1,616,110	-		CCNA_01504	0.86	+0.6
1,616,130	+		CCNA_01504	0.87	-1.4
1,616,157	+		CCNA_01504	0.89	+0.5
1,616,165	-		CCNA_01504	0.89	-1.2
1,616,165	-		CCNA_01504	0.89	+1.2
1,616,211	-				-1.1
1,616,212	-				-0.9
1,616,237	-				+2.2
1,616,254	+				+0.8
1,616,262	-				+2.8
1,616,262	-				-0.5
1,616,267	-				+0.8
1,616,300	-				+0.5
1,616,300	-				-0.8
1,616,317	-				-1.7
1,616,343	-				+2.8
1,616,368	-				-0.2
1,616,444	+				-1.5
1,616,483	+		CCNA_01505	0.15	+0.8
1,616,493	-		CCNA_01505	0.18	+0.8
1,616,559	+		CCNA_01505	0.40	+0.8
1,616,581	-		CCNA_01505	0.48	+0.9
1,616,596	+		CCNA_01505	0.52	-1.0
1,616,604	-		CCNA_01505	0.55	+0.5
1,616,673	-		CCNA_01505	0.78	+2.6
1,616,682	-		CCNA_01505	0.81	+0.5
1,616,741	-				-0.9
1,616,741	-				-0.3
1,616,741	-				-1.7
1,616,751	-				+0.3
1,616,780	-				-0.2
1,616,788	-				-0.6
1,616,827	-				+1.5
1,616,852	-				-1.4
1,616,869	-				-0.5
1,616,892	+		CCNA_01506	0.12	-0.5
1,616,894	-		CCNA_01506	0.12	-0.0
1,616,900	-		CCNA_01506	0.13	+0.8
1,616,965	-		CCNA_01506	0.22	+0.5
1,617,022	-		CCNA_01506	0.29	-0.7
1,617,022	-		CCNA_01506	0.29	+0.8
1,617,029	+		CCNA_01506	0.30	+0.8
1,617,037	-		CCNA_01506	0.31	+1.2
1,617,054	-		CCNA_01506	0.34	-1.1
1,617,092	-		CCNA_01506	0.39	-0.8
1,617,119	-		CCNA_01506	0.42	+1.8
1,617,139	+		CCNA_01506	0.45	-0.2
1,617,147	+		CCNA_01506	0.46	-0.4
1,617,153	-		CCNA_01506	0.47	-0.0
1,617,183	+		CCNA_01506	0.51	+0.5
1,617,191	-		CCNA_01506	0.52	-0.4
1,617,252	+		CCNA_01506	0.60	+1.8
1,617,252	+		CCNA_01506	0.60	-0.4
1,617,252	+		CCNA_01506	0.60	-0.9
1,617,252	+		CCNA_01506	0.60	-0.5
1,617,257	+		CCNA_01506	0.61	-2.5
1,617,259	+		CCNA_01506	0.61	+0.8
1,617,260	-		CCNA_01506	0.61	-1.6
1,617,260	-		CCNA_01506	0.61	-0.2
1,617,285	+		CCNA_01506	0.65	+0.2
1,617,286	-		CCNA_01506	0.65	-0.7
1,617,286	-		CCNA_01506	0.65	+0.0
1,617,298	+				+0.5
1,617,312	+		CCNA_01506	0.68	-0.2
1,617,319	+		CCNA_01506	0.69	-1.5
1,617,321	-		CCNA_01506	0.70	-0.3
1,617,327	-		CCNA_01506	0.70	+1.5
1,617,327	-		CCNA_01506	0.70	-0.0
1,617,327	-		CCNA_01506	0.70	+1.1
1,617,332	-		CCNA_01506	0.71	-2.0
1,617,332	-		CCNA_01506	0.71	-0.2
1,617,332	-		CCNA_01506	0.71	-1.5
1,617,416	-		CCNA_01506	0.82	+1.2
1,617,418	-		CCNA_01506	0.83	+0.3
1,617,422	+		CCNA_01506	0.83	-1.6
1,617,422	+		CCNA_01506	0.83	-0.1
1,617,425	-		CCNA_01506	0.84	+0.2
1,617,425	-		CCNA_01506	0.84	+0.4
1,617,476	+				+1.2
1,617,484	-				-1.1
1,617,491	+				+0.5
1,617,494	-				-0.4
1,617,578	+				-0.2
1,617,586	-				-1.0
1,617,586	-				-1.3
1,617,586	-				+1.2
1,617,590	+				-1.2
1,617,615	-		CCNA_01507	0.11	+0.9
1,617,674	-		CCNA_01507	0.20	-0.9
1,617,674	-		CCNA_01507	0.20	+0.1
1,617,674	-		CCNA_01507	0.20	-0.0
1,617,676	-		CCNA_01507	0.20	-3.3
1,617,723	-		CCNA_01507	0.27	+0.9
1,617,723	-		CCNA_01507	0.27	-0.5
1,617,726	+		CCNA_01507	0.28	+0.2
1,617,733	-		CCNA_01507	0.29	-1.4
1,617,734	-		CCNA_01507	0.29	-1.4
1,617,734	-		CCNA_01507	0.29	+1.8
1,617,736	+		CCNA_01507	0.29	+2.5
1,617,755	-		CCNA_01507	0.32	+0.7
1,617,780	+		CCNA_01507	0.36	+0.3
1,617,788	-		CCNA_01507	0.37	-1.0
1,617,788	-		CCNA_01507	0.37	-0.5
1,617,788	-		CCNA_01507	0.37	+0.2
1,617,788	-		CCNA_01507	0.37	+1.8
1,617,793	-		CCNA_01507	0.38	-0.5
1,617,793	-		CCNA_01507	0.38	-2.0
1,617,807	+		CCNA_01507	0.40	-0.5
1,617,808	-		CCNA_01507	0.40	-0.7
1,617,815	-		CCNA_01507	0.41	-1.2
1,617,827	-		CCNA_01507	0.43	+2.8
1,617,845	+		CCNA_01507	0.46	+0.5
1,617,853	-		CCNA_01507	0.47	-1.0
1,617,853	-		CCNA_01507	0.47	-1.1
1,617,853	-		CCNA_01507	0.47	-0.5
1,617,862	-		CCNA_01507	0.48	-0.4
1,617,891	-		CCNA_01507	0.53	+0.7
1,617,921	-		CCNA_01507	0.57	-1.1
1,617,978	-		CCNA_01507	0.66	-0.2
1,617,978	-		CCNA_01507	0.66	+1.3
1,618,027	-		CCNA_01507	0.73	-0.3
1,618,081	-		CCNA_01507	0.82	+1.0
1,618,096	+		CCNA_01507	0.84	+0.5
1,618,127	+		CCNA_01507	0.89	-0.4
1,618,136	+				+1.2
1,618,144	-				-1.8
1,618,144	-				-1.7
1,618,157	-				-0.2
1,618,165	+				-0.2
1,618,165	+				+0.3
1,618,191	-				-0.8
1,618,217	+				+1.2
1,618,217	+				+0.5
1,618,225	-				+1.8
1,618,299	+		CCNA_01508	0.12	-1.5
1,618,305	-		CCNA_01508	0.13	-1.1
1,618,316	+		CCNA_01508	0.14	-0.5
1,618,328	+		CCNA_01508	0.16	-1.1
1,618,328	+		CCNA_01508	0.16	-0.2
1,618,328	+		CCNA_01508	0.16	-0.4
1,618,335	+		CCNA_01508	0.16	+1.2
1,618,336	-		CCNA_01508	0.17	+1.2
1,618,336	-		CCNA_01508	0.17	+0.2
1,618,336	-		CCNA_01508	0.17	+2.8
1,618,336	-		CCNA_01508	0.17	-1.3
1,618,345	+		CCNA_01508	0.18	-0.7
1,618,363	-		CCNA_01508	0.20	+1.2
1,618,368	-		CCNA_01508	0.21	+1.0
1,618,413	+		CCNA_01508	0.26	-0.0
1,618,421	-		CCNA_01508	0.27	+0.3
1,618,421	-		CCNA_01508	0.27	+0.7
1,618,421	-		CCNA_01508	0.27	-0.4
1,618,469	+		CCNA_01508	0.33	+0.2
1,618,469	+		CCNA_01508	0.33	+1.8
1,618,484	-		CCNA_01508	0.35	-0.7
1,618,485	-		CCNA_01508	0.35	-0.7
1,618,485	-		CCNA_01508	0.35	+0.2
1,618,492	-		CCNA_01508	0.36	-0.4
1,618,509	+		CCNA_01508	0.39	-0.1
1,618,517	+		CCNA_01508	0.40	+1.8