Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01239

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,363,484	-				+0.1
1,363,511	-				+0.3
1,363,559	+				-0.8
1,363,579	+				-0.6
1,363,581	+				-0.0
1,363,589	-				-0.4
1,363,589	-				+1.3
1,363,596	+				-0.0
1,363,729	-		CCNA_01238	0.13	+0.3
1,363,771	-		CCNA_01238	0.19	-2.5
1,363,773	-		CCNA_01238	0.19	+0.4
1,363,899	+		CCNA_01238	0.36	+0.8
1,363,899	+		CCNA_01238	0.36	-0.9
1,363,899	-		CCNA_01238	0.36	-0.0
1,363,955	-		CCNA_01238	0.44	-0.1
1,363,955	-		CCNA_01238	0.44	+0.1
1,364,061	+		CCNA_01238	0.58	+1.2
1,364,116	+		CCNA_01238	0.66	-0.6
1,364,116	+		CCNA_01238	0.66	-2.8
1,364,116	+		CCNA_01238	0.66	+0.2
1,364,116	+		CCNA_01238	0.66	+0.4
1,364,168	+		CCNA_01238	0.73	-1.0
1,364,268	+		CCNA_01238	0.87	+0.1
1,364,288	+		CCNA_01238	0.89	+1.2
1,364,322	-				+0.4
1,364,352	+				+2.8
1,364,360	-				-0.5
1,364,371	+				+2.8
1,364,380	-				+1.8
1,364,380	-				+1.4
1,364,390	-				-0.8
1,364,449	+				+0.4
1,364,467	-				+0.3
1,364,495	-				-0.8
1,364,584	+				+0.1
1,364,584	+				+0.3
1,364,584	+				-0.0
1,364,586	-				-0.8
1,364,599	+				-0.2
1,364,607	-				-0.2
1,364,643	-		CCNA_01239	0.12	-0.2
1,364,656	-		CCNA_01239	0.13	-0.7
1,364,668	+		CCNA_01239	0.13	-0.0
1,364,747	+		CCNA_01239	0.19	+0.4
1,364,747	+		CCNA_01239	0.19	+0.4
1,364,755	-		CCNA_01239	0.19	-1.2
1,364,776	-		CCNA_01239	0.21	-1.0
1,364,789	-		CCNA_01239	0.22	+0.3
1,364,791	-		CCNA_01239	0.22	-0.4
1,364,849	+		CCNA_01239	0.26	-0.4
1,364,891	-		CCNA_01239	0.29	-1.4
1,364,891	-		CCNA_01239	0.29	+0.4
1,364,894	+		CCNA_01239	0.29	+0.4
1,364,901	-		CCNA_01239	0.30	-1.7
1,364,947	-		CCNA_01239	0.33	+0.6
1,364,947	-		CCNA_01239	0.33	-0.8
1,364,961	+		CCNA_01239	0.34	+0.4
1,365,029	-		CCNA_01239	0.39	-1.7
1,365,055	+		CCNA_01239	0.40	-0.8
1,365,055	+		CCNA_01239	0.40	-1.6
1,365,063	-		CCNA_01239	0.41	+2.8
1,365,089	+		CCNA_01239	0.43	+1.8
1,365,089	+		CCNA_01239	0.43	+2.2
1,365,104	-		CCNA_01239	0.44	-0.7
1,365,186	+		CCNA_01239	0.50	+1.8
1,365,190	-		CCNA_01239	0.50	-1.3
1,365,200	-		CCNA_01239	0.51	-1.2
1,365,236	-		CCNA_01239	0.53	-0.9
1,365,263	+		CCNA_01239	0.55	+0.4
1,365,324	-		CCNA_01239	0.59	-1.1
1,365,337	+		CCNA_01239	0.60	-0.0
1,365,337	+		CCNA_01239	0.60	-0.2
1,365,345	-		CCNA_01239	0.61	-0.4
1,365,379	+		CCNA_01239	0.63	-0.8
1,365,415	-		CCNA_01239	0.66	-1.1
1,365,422	-		CCNA_01239	0.66	-1.1
1,365,428	-		CCNA_01239	0.67	+0.2
1,365,483	+		CCNA_01239	0.70	-0.9
1,365,526	+		CCNA_01239	0.73	-0.8
1,365,534	-		CCNA_01239	0.74	-0.6
1,365,626	+		CCNA_01239	0.80	+1.2
1,365,634	-		CCNA_01239	0.81	+0.2
1,365,644	-		CCNA_01239	0.82	-0.6
1,365,644	-		CCNA_01239	0.82	-2.3
1,365,668	-		CCNA_01239	0.83	-1.2
1,365,669	-		CCNA_01239	0.83	-1.5
1,365,730	-		CCNA_01239	0.88	-2.4
1,365,799	+				-1.1
1,365,835	+				-0.4
1,365,893	+				-0.6
1,365,898	+				+1.8
1,365,898	+				-1.2
1,365,908	-				-0.0
1,365,917	+				+1.2
1,365,918	-				+0.3
1,365,926	-				+0.7
1,365,931	+				+0.4
1,365,931	+				+1.0
1,365,939	-				+0.2
1,365,939	-				-0.5
1,365,939	-				+1.8
1,366,101	+		CCNA_01240	0.26	-0.4
1,366,180	+		CCNA_01240	0.36	+0.2
1,366,194	-		CCNA_01240	0.38	-1.3
1,366,234	-		CCNA_01240	0.44	+1.8
1,366,256	-		CCNA_01240	0.46	-1.4
1,366,266	-		CCNA_01240	0.48	+0.8
1,366,287	-		CCNA_01240	0.50	-2.0
1,366,287	-		CCNA_01240	0.50	-1.4
1,366,306	-		CCNA_01240	0.53	+1.0
1,366,306	-		CCNA_01240	0.53	-0.9
1,366,314	+		CCNA_01240	0.54	-2.3
1,366,353	+		CCNA_01240	0.59	+0.2
1,366,393	+		CCNA_01240	0.64	-0.8
1,366,403	+		CCNA_01240	0.66	+0.1
1,366,457	-		CCNA_01240	0.73	-0.6
1,366,460	+		CCNA_01240	0.73	-1.2
1,366,512	+		CCNA_01240	0.80	+0.2
1,366,584	-		CCNA_01240	0.89	+2.8
1,366,625	+				+0.2
1,366,657	-				+1.2
1,366,727	-				-1.2
1,366,744	+				+1.2
1,366,752	-				+0.5
1,366,752	-				+0.8
1,366,752	-				+0.1
1,366,752	-				-0.9
1,366,752	-				+0.3
1,366,752	-				+0.8
1,366,752	-				+0.9
1,366,762	-				-0.5
1,366,819	-				+0.5
1,366,899	+		CCNA_01241	0.20	-1.4