Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00937

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,011,662	-				+3.3
1,011,662	-				+0.6
1,011,669	-				-2.0
1,011,693	-				+2.7
1,011,697	-				+1.7
1,011,699	+				-0.2
1,011,726	-				+0.7
1,011,741	+				+1.0
1,011,794	-				+0.7
1,011,841	+				-0.4
1,011,853	-				-1.3
1,011,853	-				-0.8
1,011,894	+		CCNA_00936	0.10	+0.4
1,011,894	+		CCNA_00936	0.10	-2.4
1,011,900	+		CCNA_00936	0.11	+0.7
1,011,902	-		CCNA_00936	0.11	-1.1
1,011,902	-		CCNA_00936	0.11	-0.1
1,011,913	-		CCNA_00936	0.12	-1.0
1,012,021	-		CCNA_00936	0.25	-1.6
1,012,028	+		CCNA_00936	0.26	-0.4
1,012,070	-		CCNA_00936	0.31	-0.8
1,012,076	+		CCNA_00936	0.32	-0.1
1,012,148	+		CCNA_00936	0.40	-0.6
1,012,163	+		CCNA_00936	0.42	-1.2
1,012,201	+		CCNA_00936	0.47	+1.7
1,012,209	-		CCNA_00936	0.47	+0.4
1,012,213	+		CCNA_00936	0.48	-1.5
1,012,220	-		CCNA_00936	0.49	-1.1
1,012,251	+		CCNA_00936	0.53	+1.4
1,012,301	-		CCNA_00936	0.58	+0.7
1,012,317	+		CCNA_00936	0.60	-1.3
1,012,335	+		CCNA_00936	0.62	+2.2
1,012,360	+		CCNA_00936	0.65	-0.5
1,012,404	+		CCNA_00936	0.71	-1.2
1,012,524	+		CCNA_00936	0.85	+1.2
1,012,524	+		CCNA_00936	0.85	+0.1
1,012,529	+		CCNA_00936	0.86	-0.6
1,012,532	-		CCNA_00936	0.86	+0.8
1,012,541	+		CCNA_00936	0.87	+0.4
1,012,549	-		CCNA_00936	0.88	-1.2
1,012,587	-				+1.8
1,012,587	-				-0.2
1,012,599	-				-1.2
1,012,607	+				-0.4
1,012,615	-				+0.3
1,012,617	+				-0.2
1,012,635	-				-1.2
1,012,636	+				-0.1
1,012,636	+				+1.2
1,012,657	+				-0.8
1,012,666	+				+0.9
1,012,667	+				+0.4
1,012,674	-				+0.3
1,012,676	+				+0.4
1,012,689	-		CCNA_00937	0.13	+0.1
1,012,717	-		CCNA_00937	0.23	+1.0
1,012,727	-		CCNA_00937	0.27	-0.6
1,012,727	-		CCNA_00937	0.27	-0.7
1,012,792	+		CCNA_00937	0.51	-0.7
1,012,802	+		CCNA_00937	0.54	-0.4
1,012,841	-		CCNA_00937	0.69	-2.3
1,012,856	+		CCNA_00937	0.74	-0.1
1,012,859	-		CCNA_00937	0.76	-0.8
1,012,884	+		CCNA_00937	0.85	-0.4
1,012,884	+		CCNA_00937	0.85	-2.0
1,012,894	+		CCNA_00937	0.89	-0.6
1,012,894	+		CCNA_00937	0.89	-0.6
1,012,902	-				-1.3
1,012,902	-				-1.9
1,012,902	-				-1.1
1,012,902	-				-1.2
1,012,944	-				+0.4
1,012,944	-				+0.8
1,012,946	+				-0.9
1,012,976	-				-1.2
1,013,040	+				-1.8
1,013,082	-				+0.1
1,013,083	-				-0.1
1,013,092	-				+0.1
1,013,092	-				-0.3
1,013,092	-				+0.6
1,013,116	-				+0.7
1,013,174	+				-0.8
1,013,174	+				-0.1
1,013,177	-				+0.2
1,013,182	-				+0.5
1,013,182	-				+0.9
1,013,257	-		CCNA_00938	0.14	+2.8
1,013,262	+		CCNA_00938	0.15	+0.7
1,013,289	-		CCNA_00938	0.17	-0.1
1,013,289	-		CCNA_00938	0.17	-0.8
1,013,319	-		CCNA_00938	0.20	-0.8
1,013,329	-		CCNA_00938	0.20	+0.9
1,013,347	+		CCNA_00938	0.22	-0.2
1,013,347	+		CCNA_00938	0.22	+1.1
1,013,357	+		CCNA_00938	0.23	+0.2
1,013,365	-		CCNA_00938	0.23	-0.9
1,013,377	-		CCNA_00938	0.24	+2.8
1,013,396	+		CCNA_00938	0.26	+0.3
1,013,396	+		CCNA_00938	0.26	+0.2
1,013,396	+		CCNA_00938	0.26	-1.1
1,013,406	+		CCNA_00938	0.27	+0.2
1,013,414	-		CCNA_00938	0.28	+0.4
1,013,420	-		CCNA_00938	0.28	-0.3
1,013,420	-		CCNA_00938	0.28	-0.5
1,013,442	-		CCNA_00938	0.30	-0.5
1,013,449	-		CCNA_00938	0.31	-1.0
1,013,469	-		CCNA_00938	0.32	+0.0
1,013,488	+		CCNA_00938	0.34	+0.2
1,013,489	+		CCNA_00938	0.34	-1.1
1,013,494	+		CCNA_00938	0.34	-0.2
1,013,497	-		CCNA_00938	0.35	-1.6
1,013,497	-		CCNA_00938	0.35	+1.0
1,013,557	+		CCNA_00938	0.40	-0.4
1,013,565	-		CCNA_00938	0.40	-1.2
1,013,565	-		CCNA_00938	0.40	+0.3
1,013,565	-		CCNA_00938	0.40	-1.6
1,013,565	-		CCNA_00938	0.40	+1.1
1,013,581	+		CCNA_00938	0.42	-1.7
1,013,584	-		CCNA_00938	0.42	-1.6
1,013,600	-		CCNA_00938	0.43	+0.1
1,013,605	-		CCNA_00938	0.44	-1.5
1,013,618	+		CCNA_00938	0.45	-1.2
1,013,672	+		CCNA_00938	0.49	-0.6
1,013,672	+		CCNA_00938	0.49	-0.1
1,013,680	-		CCNA_00938	0.50	+0.2
1,013,680	-		CCNA_00938	0.50	-0.6
1,013,686	+		CCNA_00938	0.51	-1.1
1,013,686	+		CCNA_00938	0.51	-2.2
1,013,694	-		CCNA_00938	0.51	+0.4
1,013,699	+		CCNA_00938	0.52	-1.0
1,013,699	+		CCNA_00938	0.52	-0.2
1,013,707	-		CCNA_00938	0.52	-0.8
1,013,713	-		CCNA_00938	0.53	-0.9
1,013,719	-		CCNA_00938	0.53	-1.7
1,013,719	-		CCNA_00938	0.53	-0.2
1,013,742	+		CCNA_00938	0.55	-0.8
1,013,764	-		CCNA_00938	0.57	-1.0
1,013,769	-				+1.8
1,013,773	+		CCNA_00938	0.58	-1.4
1,013,776	-		CCNA_00938	0.58	-1.3
1,013,781	-		CCNA_00938	0.59	-0.7
1,013,781	-		CCNA_00938	0.59	-2.4
1,013,789	+		CCNA_00938	0.59	+1.6
1,013,797	-		CCNA_00938	0.60	+0.4
1,013,797	-		CCNA_00938	0.60	+0.2
1,013,815	-		CCNA_00938	0.61	-0.4
1,013,817	+		CCNA_00938	0.62	-0.2
1,013,821	-		CCNA_00938	0.62	-1.7
1,013,825	-		CCNA_00938	0.62	-0.2
1,013,856	-		CCNA_00938	0.65	-0.4
1,013,893	+				+2.2
1,013,895	+		CCNA_00938	0.68	-0.9
1,013,907	-		CCNA_00938	0.69	-0.7