Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00901 and CCNA_00902 are separated by 328 nucleotides CCNA_00902 and CCNA_00903 are separated by 22 nucleotides
CCNA_00901: CCNA_00901 - alpha/beta hydrolase family protein, at 980,770 to 981,606
_00901
CCNA_00902: CCNA_00902 - inositol ABC transporter, periplasmic inositol-binding protein IbpA, at 981,935 to 982,915
_00902
CCNA_00903: CCNA_00903 - inositol transport ATP-binding protein IatA, at 982,938 to 984,485
_00903
Position (kb)
981
982
983 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 980.971 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 981.018 kb on + strand, within CCNA_00901 at 981.024 kb on + strand, within CCNA_00901 at 981.048 kb on + strand, within CCNA_00901 at 981.056 kb on - strand, within CCNA_00901 at 981.093 kb on - strand, within CCNA_00901 at 981.102 kb on + strand, within CCNA_00901 at 981.118 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.136 kb on - strand, within CCNA_00901 at 981.136 kb on - strand, within CCNA_00901 at 981.154 kb on + strand, within CCNA_00901 at 981.155 kb on + strand, within CCNA_00901 at 981.163 kb on - strand, within CCNA_00901 at 981.200 kb on - strand, within CCNA_00901 at 981.200 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.228 kb on - strand, within CCNA_00901 at 981.317 kb on + strand, within CCNA_00901 at 981.325 kb on - strand, within CCNA_00901 at 981.325 kb on - strand, within CCNA_00901 at 981.382 kb on - strand, within CCNA_00901 at 981.386 kb on + strand, within CCNA_00901 at 981.386 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.404 kb on - strand, within CCNA_00901 at 981.406 kb on + strand, within CCNA_00901 at 981.407 kb on - strand, within CCNA_00901 at 981.409 kb on - strand, within CCNA_00901 at 981.457 kb on - strand, within CCNA_00901 at 981.488 kb on - strand, within CCNA_00901 at 981.495 kb on + strand, within CCNA_00901 at 981.532 kb on + strand at 981.540 kb on - strand at 981.540 kb on - strand at 981.563 kb on - strand at 981.593 kb on - strand at 981.613 kb on + strand at 981.642 kb on - strand at 981.642 kb on - strand at 981.642 kb on - strand at 981.642 kb on - strand at 981.655 kb on - strand at 981.665 kb on - strand at 981.701 kb on + strand at 981.730 kb on + strand at 981.742 kb on + strand at 981.742 kb on + strand at 981.742 kb on + strand at 981.747 kb on + strand at 981.747 kb on + strand at 981.750 kb on - strand at 981.750 kb on - strand at 981.755 kb on - strand at 981.770 kb on + strand at 981.778 kb on + strand at 981.879 kb on + strand at 981.906 kb on - strand at 981.932 kb on + strand at 981.933 kb on - strand at 981.940 kb on - strand at 981.969 kb on - strand at 981.970 kb on + strand at 981.997 kb on - strand at 982.012 kb on - strand at 982.034 kb on - strand, within CCNA_00902 at 982.045 kb on + strand, within CCNA_00902 at 982.052 kb on + strand, within CCNA_00902 at 982.074 kb on + strand, within CCNA_00902 at 982.076 kb on + strand, within CCNA_00902 at 982.122 kb on - strand, within CCNA_00902 at 982.137 kb on - strand, within CCNA_00902 at 982.155 kb on - strand, within CCNA_00902 at 982.157 kb on + strand, within CCNA_00902 at 982.162 kb on + strand, within CCNA_00902 at 982.170 kb on + strand, within CCNA_00902 at 982.190 kb on - strand, within CCNA_00902 at 982.200 kb on + strand, within CCNA_00902 at 982.200 kb on + strand, within CCNA_00902 at 982.205 kb on + strand, within CCNA_00902 at 982.205 kb on + strand, within CCNA_00902 at 982.205 kb on + strand, within CCNA_00902 at 982.213 kb on + strand, within CCNA_00902 at 982.213 kb on + strand, within CCNA_00902 at 982.213 kb on - strand, within CCNA_00902 at 982.221 kb on - strand, within CCNA_00902 at 982.250 kb on + strand, within CCNA_00902 at 982.273 kb on - strand, within CCNA_00902 at 982.292 kb on + strand, within CCNA_00902 at 982.383 kb on - strand, within CCNA_00902 at 982.394 kb on + strand, within CCNA_00902 at 982.422 kb on + strand at 982.449 kb on + strand, within CCNA_00902 at 982.449 kb on + strand, within CCNA_00902 at 982.468 kb on + strand, within CCNA_00902 at 982.468 kb on + strand, within CCNA_00902 at 982.476 kb on - strand, within CCNA_00902 at 982.476 kb on - strand, within CCNA_00902 at 982.486 kb on - strand, within CCNA_00902 at 982.540 kb on + strand, within CCNA_00902 at 982.548 kb on - strand, within CCNA_00902 at 982.548 kb on - strand, within CCNA_00902 at 982.556 kb on + strand, within CCNA_00902 at 982.585 kb on - strand, within CCNA_00902 at 982.622 kb on - strand, within CCNA_00902 at 982.637 kb on + strand, within CCNA_00902 at 982.644 kb on - strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.678 kb on - strand, within CCNA_00902 at 982.678 kb on - strand, within CCNA_00902 at 982.680 kb on + strand, within CCNA_00902 at 982.687 kb on + strand, within CCNA_00902 at 982.695 kb on - strand, within CCNA_00902 at 982.695 kb on - strand, within CCNA_00902 at 982.701 kb on + strand, within CCNA_00902 at 982.721 kb on + strand, within CCNA_00902 at 982.721 kb on - strand, within CCNA_00902 at 982.723 kb on - strand, within CCNA_00902 at 982.760 kb on + strand, within CCNA_00902 at 982.766 kb on - strand, within CCNA_00902 at 982.768 kb on - strand, within CCNA_00902 at 982.768 kb on - strand, within CCNA_00902 at 982.771 kb on - strand, within CCNA_00902 at 982.815 kb on + strand, within CCNA_00902 at 982.816 kb on + strand, within CCNA_00902 at 982.822 kb on + strand at 982.824 kb on - strand at 982.828 kb on - strand at 982.848 kb on + strand at 982.848 kb on + strand at 982.848 kb on + strand at 982.854 kb on + strand at 982.856 kb on - strand at 982.867 kb on - strand at 982.873 kb on + strand at 982.890 kb on - strand at 982.934 kb on + strand at 982.935 kb on + strand at 982.943 kb on - strand at 983.008 kb on - strand at 983.017 kb on + strand at 983.022 kb on + strand at 983.062 kb on + strand at 983.070 kb on - strand at 983.072 kb on + strand at 983.077 kb on + strand at 983.080 kb on - strand at 983.105 kb on + strand, within CCNA_00903 at 983.112 kb on + strand, within CCNA_00903 at 983.113 kb on - strand, within CCNA_00903 at 983.120 kb on - strand, within CCNA_00903 at 983.132 kb on + strand, within CCNA_00903 at 983.140 kb on - strand, within CCNA_00903 at 983.140 kb on - strand, within CCNA_00903 at 983.143 kb on + strand, within CCNA_00903 at 983.209 kb on + strand, within CCNA_00903 at 983.231 kb on + strand at 983.268 kb on - strand, within CCNA_00903 at 983.268 kb on - strand, within CCNA_00903 at 983.268 kb on - strand, within CCNA_00903 at 983.268 kb on - strand, within CCNA_00903 at 983.297 kb on + strand, within CCNA_00903 at 983.298 kb on + strand, within CCNA_00903 at 983.298 kb on + strand, within CCNA_00903 at 983.305 kb on - strand, within CCNA_00903 at 983.325 kb on - strand, within CCNA_00903 at 983.343 kb on - strand at 983.375 kb on + strand, within CCNA_00903 at 983.396 kb on + strand, within CCNA_00903 at 983.404 kb on - strand, within CCNA_00903 at 983.404 kb on - strand, within CCNA_00903 at 983.404 kb on - strand, within CCNA_00903 at 983.516 kb on + strand, within CCNA_00903 at 983.523 kb on + strand, within CCNA_00903 at 983.524 kb on - strand, within CCNA_00903 at 983.524 kb on - strand, within CCNA_00903 at 983.557 kb on - strand, within CCNA_00903 at 983.579 kb on - strand, within CCNA_00903 at 983.672 kb on + strand, within CCNA_00903 at 983.815 kb on - strand, within CCNA_00903 at 983.830 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.882 kb on + strand, within CCNA_00903
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 980,971 + CCNA_00901 0.24 -0.7 980,971 + CCNA_00901 0.24 +0.4 980,971 + CCNA_00901 0.24 +0.1 980,979 - CCNA_00901 0.25 -0.4 980,979 - CCNA_00901 0.25 +1.0 980,979 - CCNA_00901 0.25 -0.9 980,979 - CCNA_00901 0.25 -0.4 981,018 + CCNA_00901 0.30 +0.7 981,024 + CCNA_00901 0.30 +0.7 981,048 + CCNA_00901 0.33 -0.4 981,056 - CCNA_00901 0.34 -0.4 981,093 - CCNA_00901 0.39 -0.4 981,102 + CCNA_00901 0.40 +0.4 981,118 + CCNA_00901 0.42 -1.4 981,128 + CCNA_00901 0.43 +0.0 981,128 + CCNA_00901 0.43 -1.0 981,128 + CCNA_00901 0.43 +0.1 981,136 - CCNA_00901 0.44 +0.4 981,136 - CCNA_00901 0.44 -1.1 981,154 + CCNA_00901 0.46 -1.0 981,155 + CCNA_00901 0.46 -1.3 981,163 - CCNA_00901 0.47 +0.1 981,200 - CCNA_00901 0.51 +4.7 981,200 - CCNA_00901 0.51 -0.3 981,223 - CCNA_00901 0.54 -0.1 981,223 - CCNA_00901 0.54 -0.4 981,223 - CCNA_00901 0.54 -0.3 981,228 - CCNA_00901 0.55 -1.8 981,317 + CCNA_00901 0.65 -1.0 981,325 - CCNA_00901 0.66 +5.1 981,325 - CCNA_00901 0.66 -1.5 981,382 - CCNA_00901 0.73 -0.4 981,386 + CCNA_00901 0.74 +0.7 981,386 + CCNA_00901 0.74 -0.3 981,401 + CCNA_00901 0.75 -1.4 981,401 + CCNA_00901 0.75 -0.9 981,401 + CCNA_00901 0.75 +2.7 981,404 - CCNA_00901 0.76 +0.4 981,406 + CCNA_00901 0.76 -0.1 981,407 - CCNA_00901 0.76 +1.1 981,409 - CCNA_00901 0.76 +1.7 981,457 - CCNA_00901 0.82 -0.7 981,488 - CCNA_00901 0.86 -0.7 981,495 + CCNA_00901 0.87 -0.4 981,532 + +2.7 981,540 - -0.0 981,540 - -1.8 981,563 - +0.3 981,593 - +1.1 981,613 + -0.1 981,642 - -2.4 981,642 - -0.5 981,642 - -0.1 981,642 - +0.1 981,655 - +2.7 981,665 - +3.1 981,701 + -0.1 981,730 + -0.6 981,742 + -0.9 981,742 + +2.7 981,742 + +2.7 981,747 + +0.4 981,747 + -0.3 981,750 - -0.6 981,750 - -0.5 981,755 - -1.1 981,770 + +1.1 981,778 + +1.7 981,879 + -0.7 981,906 - -0.6 981,932 + -0.8 981,933 - -0.6 981,940 - +0.3 981,969 - +1.1 981,970 + -0.9 981,997 - +1.3 982,012 - -0.1 982,034 - CCNA_00902 0.10 -1.4 982,045 + CCNA_00902 0.11 -0.1 982,052 + CCNA_00902 0.12 -0.4 982,074 + CCNA_00902 0.14 -0.9 982,076 + CCNA_00902 0.14 -0.7 982,122 - CCNA_00902 0.19 -1.4 982,137 - CCNA_00902 0.21 +0.0 982,155 - CCNA_00902 0.22 -1.3 982,157 + CCNA_00902 0.23 -1.6 982,162 + CCNA_00902 0.23 +0.7 982,170 + CCNA_00902 0.24 +0.1 982,190 - CCNA_00902 0.26 +0.1 982,200 + CCNA_00902 0.27 -1.4 982,200 + CCNA_00902 0.27 -0.5 982,205 + CCNA_00902 0.28 -0.6 982,205 + CCNA_00902 0.28 -0.8 982,205 + CCNA_00902 0.28 -0.6 982,213 + CCNA_00902 0.28 +0.4 982,213 + CCNA_00902 0.28 +0.4 982,213 - CCNA_00902 0.28 -0.3 982,221 - CCNA_00902 0.29 -0.1 982,250 + CCNA_00902 0.32 +0.7 982,273 - CCNA_00902 0.34 +0.7 982,292 + CCNA_00902 0.36 -1.2 982,383 - CCNA_00902 0.46 +0.1 982,394 + CCNA_00902 0.47 +0.7 982,422 + +2.7 982,449 + CCNA_00902 0.52 +1.7 982,449 + CCNA_00902 0.52 +0.7 982,468 + CCNA_00902 0.54 -0.9 982,468 + CCNA_00902 0.54 -0.1 982,476 - CCNA_00902 0.55 -0.3 982,476 - CCNA_00902 0.55 -0.7 982,486 - CCNA_00902 0.56 -0.4 982,540 + CCNA_00902 0.62 -1.0 982,548 - CCNA_00902 0.62 -1.3 982,548 - CCNA_00902 0.62 +0.4 982,556 + CCNA_00902 0.63 -0.1 982,585 - CCNA_00902 0.66 +0.0 982,622 - CCNA_00902 0.70 +2.7 982,637 + CCNA_00902 0.72 -1.4 982,644 - CCNA_00902 0.72 +0.4 982,670 + CCNA_00902 0.75 -0.3 982,670 + CCNA_00902 0.75 -1.5 982,670 + CCNA_00902 0.75 +0.1 982,670 + CCNA_00902 0.75 +1.1 982,670 + CCNA_00902 0.75 -0.6 982,678 - CCNA_00902 0.76 -1.0 982,678 - CCNA_00902 0.76 +1.1 982,680 + CCNA_00902 0.76 +1.2 982,687 + CCNA_00902 0.77 -0.3 982,695 - CCNA_00902 0.77 +2.7 982,695 - CCNA_00902 0.77 -0.4 982,701 + CCNA_00902 0.78 +2.7 982,721 + CCNA_00902 0.80 +0.4 982,721 - CCNA_00902 0.80 +0.4 982,723 - CCNA_00902 0.80 -2.2 982,760 + CCNA_00902 0.84 +0.1 982,766 - CCNA_00902 0.85 +0.0 982,768 - CCNA_00902 0.85 -1.1 982,768 - CCNA_00902 0.85 -0.6 982,771 - CCNA_00902 0.85 -0.9 982,815 + CCNA_00902 0.90 +0.1 982,816 + CCNA_00902 0.90 +0.6 982,822 + -1.8 982,824 - +0.7 982,828 - +2.0 982,848 + -1.4 982,848 + +0.1 982,848 + -0.1 982,854 + +1.5 982,856 - -0.1 982,867 - -0.7 982,873 + -0.1 982,890 - -1.2 982,934 + +0.7 982,935 + +1.8 982,943 - -2.1 983,008 - -0.4 983,017 + +2.7 983,022 + -0.9 983,062 + -0.1 983,070 - +0.4 983,072 + -1.3 983,077 + +0.4 983,080 - -2.5 983,105 + CCNA_00903 0.11 -1.4 983,112 + CCNA_00903 0.11 -0.6 983,113 - CCNA_00903 0.11 -0.2 983,120 - CCNA_00903 0.12 +1.1 983,132 + CCNA_00903 0.13 +1.0 983,140 - CCNA_00903 0.13 +1.7 983,140 - CCNA_00903 0.13 -0.1 983,143 + CCNA_00903 0.13 -0.3 983,209 + CCNA_00903 0.18 +0.7 983,231 + +2.7 983,268 - CCNA_00903 0.21 -0.7 983,268 - CCNA_00903 0.21 -0.9 983,268 - CCNA_00903 0.21 +0.7 983,268 - CCNA_00903 0.21 -0.3 983,297 + CCNA_00903 0.23 +0.4 983,298 + CCNA_00903 0.23 +1.1 983,298 + CCNA_00903 0.23 -0.7 983,305 - CCNA_00903 0.24 -1.3 983,325 - CCNA_00903 0.25 +0.4 983,343 - +1.1 983,375 + CCNA_00903 0.28 +0.6 983,396 + CCNA_00903 0.30 -1.9 983,404 - CCNA_00903 0.30 -0.3 983,404 - CCNA_00903 0.30 -1.2 983,404 - CCNA_00903 0.30 -1.2 983,516 + CCNA_00903 0.37 +0.6 983,523 + CCNA_00903 0.38 -0.8 983,524 - CCNA_00903 0.38 -0.1 983,524 - CCNA_00903 0.38 +0.4 983,557 - CCNA_00903 0.40 -0.7 983,579 - CCNA_00903 0.41 -0.9 983,672 + CCNA_00903 0.47 +1.1 983,815 - CCNA_00903 0.57 -1.0 983,830 + CCNA_00903 0.58 -1.5 983,835 + CCNA_00903 0.58 +0.4 983,835 + CCNA_00903 0.58 +0.1 983,835 + CCNA_00903 0.58 +0.7 983,835 + CCNA_00903 0.58 +0.4 983,843 - CCNA_00903 0.58 -1.0 983,843 - CCNA_00903 0.58 -0.1 983,843 - CCNA_00903 0.58 +2.1 983,843 - CCNA_00903 0.58 +0.4 983,843 - CCNA_00903 0.58 -1.3 983,843 - CCNA_00903 0.58 +1.4 983,843 - CCNA_00903 0.58 +1.7 983,882 + CCNA_00903 0.61 -0.1
Or see this region's nucleotide sequence