Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00281 and CCNA_00282 are separated by 91 nucleotides CCNA_00282 and CCNA_00283 are separated by 117 nucleotides CCNA_00283 and CCNA_00284 overlap by 4 nucleotides
CCNA_00281: CCNA_00281 - methionyl-tRNA formyltransferase, at 293,641 to 294,567
_00281
CCNA_00282: CCNA_00282 - conserved cell surface protein, at 294,659 to 294,991
_00282
CCNA_00283: CCNA_00283 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 295,109 to 295,969
_00283
CCNA_00284: CCNA_00284 - pyrimidine 5'-nucleotidase family protein, at 295,966 to 296,631
_00284
Position (kb) 294
295 Strain fitness (log2 ratio) -1
0
1
2
3 at 293.660 kb on - strand at 293.662 kb on - strand at 293.804 kb on + strand, within CCNA_00281 at 293.961 kb on + strand, within CCNA_00281 at 294.289 kb on + strand, within CCNA_00281 at 294.419 kb on + strand, within CCNA_00281 at 294.609 kb on + strand at 294.609 kb on + strand at 294.617 kb on - strand at 294.632 kb on + strand at 294.632 kb on + strand at 294.640 kb on - strand at 294.640 kb on - strand at 294.650 kb on + strand at 294.655 kb on + strand at 294.663 kb on - strand at 294.663 kb on - strand at 294.677 kb on - strand at 294.745 kb on + strand, within CCNA_00282 at 294.745 kb on + strand, within CCNA_00282 at 294.746 kb on + strand, within CCNA_00282 at 294.791 kb on + strand, within CCNA_00282 at 294.799 kb on - strand, within CCNA_00282 at 294.849 kb on + strand, within CCNA_00282 at 294.869 kb on + strand, within CCNA_00282 at 294.877 kb on - strand, within CCNA_00282 at 294.877 kb on - strand, within CCNA_00282 at 294.912 kb on - strand, within CCNA_00282 at 294.912 kb on - strand, within CCNA_00282 at 294.912 kb on - strand, within CCNA_00282 at 294.994 kb on - strand at 294.995 kb on - strand at 295.041 kb on - strand at 295.050 kb on - strand at 295.078 kb on + strand at 295.107 kb on + strand at 295.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 293,660 - +0.9 293,662 - -0.4 293,804 + CCNA_00281 0.18 +1.0 293,961 + CCNA_00281 0.35 -0.3 294,289 + CCNA_00281 0.70 -0.0 294,419 + CCNA_00281 0.84 +1.0 294,609 + +0.6 294,609 + -1.2 294,617 - -0.2 294,632 + +0.3 294,632 + -0.7 294,640 - -1.4 294,640 - +2.5 294,650 + +0.0 294,655 + +2.5 294,663 - -0.8 294,663 - +0.2 294,677 - +0.5 294,745 + CCNA_00282 0.26 -1.5 294,745 + CCNA_00282 0.26 -1.6 294,746 + CCNA_00282 0.26 -1.5 294,791 + CCNA_00282 0.40 -1.3 294,799 - CCNA_00282 0.42 +0.0 294,849 + CCNA_00282 0.57 -1.3 294,869 + CCNA_00282 0.63 -0.6 294,877 - CCNA_00282 0.65 -0.3 294,877 - CCNA_00282 0.65 -0.0 294,912 - CCNA_00282 0.76 +0.9 294,912 - CCNA_00282 0.76 -0.4 294,912 - CCNA_00282 0.76 -0.5 294,994 - +0.1 294,995 - -0.0 295,041 - +2.8 295,050 - +0.3 295,078 + -0.4 295,107 + -0.2 295,962 - +1.5
Or see this region's nucleotide sequence