Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00275 and CCNA_00276 are separated by 89 nucleotides CCNA_00276 and CCNA_00277 are separated by 64 nucleotides
CCNA_00275: CCNA_00275 - transposase, DDE family, at 288,082 to 289,527
_00275
CCNA_00276: CCNA_00276 - hypothetical protein, at 289,617 to 290,096
_00276
CCNA_00277: CCNA_00277 - succinyl-diaminopimelate desuccinylase, at 290,161 to 291,321
_00277
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 289.540 kb on + strand at 289.585 kb on + strand at 289.585 kb on + strand at 289.585 kb on + strand at 289.585 kb on + strand at 289.593 kb on - strand at 289.593 kb on - strand at 289.593 kb on - strand at 289.593 kb on - strand at 289.594 kb on - strand at 289.629 kb on + strand at 289.639 kb on + strand at 289.659 kb on - strand at 289.666 kb on - strand, within CCNA_00276 at 289.675 kb on - strand, within CCNA_00276 at 289.699 kb on - strand, within CCNA_00276 at 289.720 kb on - strand, within CCNA_00276 at 289.720 kb on - strand, within CCNA_00276 at 289.722 kb on + strand, within CCNA_00276 at 289.768 kb on - strand, within CCNA_00276 at 289.787 kb on - strand, within CCNA_00276 at 289.798 kb on + strand, within CCNA_00276 at 289.818 kb on - strand, within CCNA_00276 at 289.818 kb on - strand, within CCNA_00276 at 289.858 kb on + strand, within CCNA_00276 at 289.887 kb on - strand, within CCNA_00276 at 289.888 kb on + strand, within CCNA_00276 at 289.936 kb on - strand, within CCNA_00276 at 289.936 kb on - strand, within CCNA_00276 at 289.976 kb on + strand, within CCNA_00276 at 289.984 kb on - strand, within CCNA_00276 at 290.000 kb on + strand, within CCNA_00276 at 290.000 kb on + strand, within CCNA_00276 at 290.008 kb on - strand, within CCNA_00276 at 290.030 kb on + strand, within CCNA_00276 at 290.033 kb on - strand, within CCNA_00276 at 290.039 kb on + strand, within CCNA_00276 at 290.039 kb on + strand, within CCNA_00276 at 290.044 kb on + strand, within CCNA_00276 at 290.047 kb on - strand, within CCNA_00276 at 290.047 kb on - strand, within CCNA_00276 at 290.052 kb on - strand at 290.072 kb on - strand at 290.081 kb on + strand at 290.099 kb on - strand at 290.145 kb on + strand at 290.145 kb on + strand at 290.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 289,540 + -0.0 289,585 + -1.1 289,585 + +0.6 289,585 + -1.5 289,585 + -1.0 289,593 - -0.3 289,593 - +2.6 289,593 - +0.7 289,593 - -1.0 289,594 - -0.1 289,629 + +1.6 289,639 + +1.0 289,659 - +0.7 289,666 - CCNA_00276 0.10 -0.8 289,675 - CCNA_00276 0.12 -1.7 289,699 - CCNA_00276 0.17 +1.0 289,720 - CCNA_00276 0.21 +0.2 289,720 - CCNA_00276 0.21 -0.2 289,722 + CCNA_00276 0.22 +0.2 289,768 - CCNA_00276 0.31 -1.1 289,787 - CCNA_00276 0.35 +1.9 289,798 + CCNA_00276 0.38 +2.6 289,818 - CCNA_00276 0.42 +1.6 289,818 - CCNA_00276 0.42 -0.9 289,858 + CCNA_00276 0.50 -2.7 289,887 - CCNA_00276 0.56 -0.7 289,888 + CCNA_00276 0.56 +1.6 289,936 - CCNA_00276 0.66 +1.0 289,936 - CCNA_00276 0.66 -1.0 289,976 + CCNA_00276 0.75 -0.0 289,984 - CCNA_00276 0.76 +1.1 290,000 + CCNA_00276 0.80 +1.7 290,000 + CCNA_00276 0.80 +0.4 290,008 - CCNA_00276 0.81 -0.8 290,030 + CCNA_00276 0.86 -0.3 290,033 - CCNA_00276 0.87 +0.0 290,039 + CCNA_00276 0.88 +2.4 290,039 + CCNA_00276 0.88 +0.2 290,044 + CCNA_00276 0.89 +1.8 290,047 - CCNA_00276 0.90 +0.1 290,047 - CCNA_00276 0.90 -0.3 290,052 - -1.0 290,072 - +0.0 290,081 + +3.6 290,099 - +1.0 290,145 + +1.3 290,145 + +0.8 290,171 - +2.6
Or see this region's nucleotide sequence