Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00181

Experiment: PYE with Vancomycin 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00180 and CCNA_00181 overlap by 4 nucleotidesCCNA_00181 and CCNA_00182 overlap by 4 nucleotidesCCNA_00182 and CCNA_00183 are separated by 109 nucleotides CCNA_00180: CCNA_00180 - type II secretion pathway protein L, at 193,848 to 194,954 _00180 CCNA_00181: CCNA_00181 - type II secretion pathway protein M, at 194,951 to 195,427 _00181 CCNA_00182: CCNA_00182 - type II secretion pathway protein N, at 195,424 to 196,140 _00182 CCNA_00183: CCNA_00183 - type II secretory pathway, prepilin signal peptidase, at 196,250 to 197,011 _00183 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2 3at 193.955 kb on - strandat 193.982 kb on + strand, within CCNA_00180at 193.990 kb on + strand, within CCNA_00180at 193.994 kb on + strand, within CCNA_00180at 194.032 kb on + strand, within CCNA_00180at 194.040 kb on - strand, within CCNA_00180at 194.053 kb on + strand, within CCNA_00180at 194.058 kb on + strand, within CCNA_00180at 194.066 kb on - strand, within CCNA_00180at 194.066 kb on - strand, within CCNA_00180at 194.098 kb on + strand, within CCNA_00180at 194.118 kb on + strand, within CCNA_00180at 194.161 kb on + strand, within CCNA_00180at 194.163 kb on - strand, within CCNA_00180at 194.168 kb on + strand, within CCNA_00180at 194.168 kb on + strand, within CCNA_00180at 194.168 kb on + strand, within CCNA_00180at 194.176 kb on - strand, within CCNA_00180at 194.178 kb on + strand, within CCNA_00180at 194.186 kb on - strand, within CCNA_00180at 194.190 kb on + strand, within CCNA_00180at 194.198 kb on - strand, within CCNA_00180at 194.198 kb on - strand, within CCNA_00180at 194.198 kb on - strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.269 kb on + strand, within CCNA_00180at 194.277 kb on - strand, within CCNA_00180at 194.283 kb on + strand, within CCNA_00180at 194.335 kb on - strand, within CCNA_00180at 194.335 kb on - strand, within CCNA_00180at 194.390 kb on + strand, within CCNA_00180at 194.399 kb on + strand, within CCNA_00180at 194.403 kb on + strand, within CCNA_00180at 194.456 kb on - strand, within CCNA_00180at 194.510 kb on - strand, within CCNA_00180at 194.540 kb on + strand, within CCNA_00180at 194.546 kb on - strand, within CCNA_00180at 194.548 kb on - strand, within CCNA_00180at 194.638 kb on - strand, within CCNA_00180at 194.640 kb on - strand, within CCNA_00180at 194.671 kb on + strand, within CCNA_00180at 194.671 kb on + strand, within CCNA_00180at 194.677 kb on - strand, within CCNA_00180at 194.679 kb on - strand, within CCNA_00180at 194.719 kb on - strand, within CCNA_00180at 194.752 kb on + strand, within CCNA_00180at 194.758 kb on + strand, within CCNA_00180at 194.777 kb on - strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.847 kb on + strandat 194.869 kb on + strandat 194.875 kb on + strandat 194.883 kb on - strandat 194.907 kb on - strandat 194.918 kb on + strandat 194.948 kb on + strandat 194.949 kb on - strandat 194.956 kb on - strandat 194.962 kb on + strandat 194.962 kb on + strandat 194.962 kb on + strandat 194.962 kb on + strandat 195.048 kb on - strand, within CCNA_00181at 195.057 kb on + strand, within CCNA_00181at 195.088 kb on + strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.130 kb on + strand, within CCNA_00181at 195.138 kb on - strand, within CCNA_00181at 195.210 kb on - strand, within CCNA_00181at 195.273 kb on - strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.313 kb on - strand, within CCNA_00181at 195.318 kb on - strand, within CCNA_00181at 195.331 kb on - strand, within CCNA_00181at 195.358 kb on - strand, within CCNA_00181at 195.388 kb on + strandat 195.396 kb on - strandat 195.396 kb on - strandat 195.408 kb on - strandat 195.442 kb on - strandat 195.464 kb on + strandat 195.468 kb on + strandat 195.475 kb on + strandat 195.524 kb on + strand, within CCNA_00182at 195.524 kb on + strand, within CCNA_00182at 195.529 kb on - strand, within CCNA_00182at 195.530 kb on - strand, within CCNA_00182at 195.547 kb on - strand, within CCNA_00182at 195.549 kb on - strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.581 kb on - strand, within CCNA_00182at 195.631 kb on - strand, within CCNA_00182at 195.636 kb on + strand, within CCNA_00182at 195.640 kb on - strand, within CCNA_00182at 195.654 kb on + strand, within CCNA_00182at 195.672 kb on - strand, within CCNA_00182at 195.683 kb on - strand, within CCNA_00182at 195.696 kb on + strand, within CCNA_00182at 195.711 kb on - strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.825 kb on + strand, within CCNA_00182at 195.825 kb on + strand, within CCNA_00182at 195.882 kb on + strand, within CCNA_00182at 195.892 kb on + strand, within CCNA_00182at 195.892 kb on + strand, within CCNA_00182at 195.914 kb on - strand, within CCNA_00182at 195.916 kb on + strand, within CCNA_00182at 195.937 kb on - strand, within CCNA_00182at 195.985 kb on - strand, within CCNA_00182at 195.985 kb on - strand, within CCNA_00182at 195.995 kb on - strand, within CCNA_00182at 195.996 kb on + strand, within CCNA_00182at 196.004 kb on - strand, within CCNA_00182at 196.028 kb on - strand, within CCNA_00182at 196.046 kb on + strand, within CCNA_00182at 196.051 kb on + strand, within CCNA_00182at 196.059 kb on - strand, within CCNA_00182at 196.114 kb on + strandat 196.246 kb on + strandat 196.259 kb on - strandat 196.261 kb on - strandat 196.275 kb on + strandat 196.275 kb on + strandat 196.275 kb on + strandat 196.278 kb on - strandat 196.283 kb on - strandat 196.361 kb on + strand, within CCNA_00183at 196.361 kb on + strand, within CCNA_00183at 196.362 kb on - strand, within CCNA_00183at 196.369 kb on - strand, within CCNA_00183at 196.369 kb on - strand, within CCNA_00183at 196.403 kb on + strand, within CCNA_00183at 196.406 kb on - strand, within CCNA_00183at 196.406 kb on - strand, within CCNA_00183at 196.408 kb on + strand, within CCNA_00183

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml
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193,955 - +0.2
193,982 + CCNA_00180 0.12 -0.8
193,990 + CCNA_00180 0.13 -1.8
193,994 + CCNA_00180 0.13 -0.3
194,032 + CCNA_00180 0.17 -1.6
194,040 - CCNA_00180 0.17 -1.4
194,053 + CCNA_00180 0.19 +0.2
194,058 + CCNA_00180 0.19 -1.1
194,066 - CCNA_00180 0.20 +0.1
194,066 - CCNA_00180 0.20 +0.7
194,098 + CCNA_00180 0.23 -0.7
194,118 + CCNA_00180 0.24 -1.3
194,161 + CCNA_00180 0.28 +1.5
194,163 - CCNA_00180 0.28 -1.9
194,168 + CCNA_00180 0.29 -0.4
194,168 + CCNA_00180 0.29 -0.6
194,168 + CCNA_00180 0.29 -1.3
194,176 - CCNA_00180 0.30 +2.5
194,178 + CCNA_00180 0.30 -0.1
194,186 - CCNA_00180 0.31 -1.1
194,190 + CCNA_00180 0.31 -0.2
194,198 - CCNA_00180 0.32 -1.7
194,198 - CCNA_00180 0.32 -2.0
194,198 - CCNA_00180 0.32 +0.2
194,211 + CCNA_00180 0.33 -1.8
194,211 + CCNA_00180 0.33 -2.3
194,211 + CCNA_00180 0.33 +2.5
194,211 + CCNA_00180 0.33 +0.9
194,219 - CCNA_00180 0.34 -1.3
194,219 - CCNA_00180 0.34 -0.3
194,219 - CCNA_00180 0.34 -1.5
194,219 - CCNA_00180 0.34 +2.5
194,219 - CCNA_00180 0.34 -2.0
194,269 + CCNA_00180 0.38 +1.5
194,277 - CCNA_00180 0.39 -1.0
194,283 + CCNA_00180 0.39 +0.2
194,335 - CCNA_00180 0.44 -0.1
194,335 - CCNA_00180 0.44 -0.3
194,390 + CCNA_00180 0.49 -0.1
194,399 + CCNA_00180 0.50 -1.1
194,403 + CCNA_00180 0.50 +0.5
194,456 - CCNA_00180 0.55 +1.2
194,510 - CCNA_00180 0.60 -0.3
194,540 + CCNA_00180 0.63 -1.1
194,546 - CCNA_00180 0.63 +0.5
194,548 - CCNA_00180 0.63 -0.6
194,638 - CCNA_00180 0.71 +0.0
194,640 - CCNA_00180 0.72 -0.5
194,671 + CCNA_00180 0.74 -0.1
194,671 + CCNA_00180 0.74 +0.9
194,677 - CCNA_00180 0.75 -1.2
194,679 - CCNA_00180 0.75 -0.7
194,719 - CCNA_00180 0.79 -1.3
194,752 + CCNA_00180 0.82 +1.1
194,758 + CCNA_00180 0.82 +0.2
194,777 - CCNA_00180 0.84 -1.4
194,779 + CCNA_00180 0.84 +0.2
194,779 + CCNA_00180 0.84 -1.4
194,779 + CCNA_00180 0.84 -2.2
194,787 - CCNA_00180 0.85 -1.1
194,787 - CCNA_00180 0.85 -0.1
194,787 - CCNA_00180 0.85 -1.0
194,847 + +1.5
194,869 + -0.8
194,875 + -1.0
194,883 - -1.4
194,907 - -2.4
194,918 + -2.1
194,948 + -0.9
194,949 - +0.5
194,956 - +0.9
194,962 + +0.3
194,962 + -0.3
194,962 + -0.7
194,962 + -0.7
195,048 - CCNA_00181 0.20 -1.4
195,057 + CCNA_00181 0.22 +1.0
195,088 + CCNA_00181 0.29 -1.6
195,111 - CCNA_00181 0.34 -1.3
195,111 - CCNA_00181 0.34 -0.5
195,111 - CCNA_00181 0.34 +0.4
195,130 + CCNA_00181 0.38 -0.7
195,138 - CCNA_00181 0.39 -2.2
195,210 - CCNA_00181 0.54 -2.2
195,273 - CCNA_00181 0.68 -0.1
195,310 + CCNA_00181 0.75 +0.1
195,310 + CCNA_00181 0.75 +0.5
195,310 + CCNA_00181 0.75 +1.5
195,310 + CCNA_00181 0.75 -1.1
195,313 - CCNA_00181 0.76 -2.0
195,318 - CCNA_00181 0.77 +1.2
195,331 - CCNA_00181 0.80 -1.0
195,358 - CCNA_00181 0.85 -1.5
195,388 + -0.1
195,396 - -0.3
195,396 - -0.7
195,408 - +0.2
195,442 - -0.7
195,464 + +2.2
195,468 + -0.1
195,475 + +0.0
195,524 + CCNA_00182 0.14 -0.8
195,524 + CCNA_00182 0.14 -0.5
195,529 - CCNA_00182 0.15 -1.6
195,530 - CCNA_00182 0.15 -0.5
195,547 - CCNA_00182 0.17 +0.0
195,549 - CCNA_00182 0.17 +0.2
195,558 + CCNA_00182 0.19 +0.5
195,558 + CCNA_00182 0.19 -0.7
195,558 + CCNA_00182 0.19 +0.3
195,558 + CCNA_00182 0.19 +0.1
195,558 + CCNA_00182 0.19 -1.3
195,558 + CCNA_00182 0.19 -0.7
195,558 + CCNA_00182 0.19 -0.1
195,558 + CCNA_00182 0.19 -1.0
195,566 - CCNA_00182 0.20 -1.1
195,566 - CCNA_00182 0.20 -0.3
195,566 - CCNA_00182 0.20 -0.1
195,566 - CCNA_00182 0.20 -1.1
195,573 + CCNA_00182 0.21 -1.1
195,573 + CCNA_00182 0.21 -1.1
195,573 + CCNA_00182 0.21 +0.5
195,581 - CCNA_00182 0.22 -1.9
195,631 - CCNA_00182 0.29 -0.1
195,636 + CCNA_00182 0.30 +1.3
195,640 - CCNA_00182 0.30 -0.5
195,654 + CCNA_00182 0.32 +1.1
195,672 - CCNA_00182 0.35 +1.0
195,683 - CCNA_00182 0.36 +0.5
195,696 + CCNA_00182 0.38 -1.3
195,711 - CCNA_00182 0.40 +0.5
195,757 + CCNA_00182 0.46 +0.9
195,757 + CCNA_00182 0.46 -0.7
195,757 + CCNA_00182 0.46 -0.6
195,758 + CCNA_00182 0.47 -1.1
195,758 + CCNA_00182 0.47 -0.3
195,758 + CCNA_00182 0.47 -0.7
195,758 + CCNA_00182 0.47 +0.5
195,765 - CCNA_00182 0.48 -0.5
195,765 - CCNA_00182 0.48 +2.5
195,765 - CCNA_00182 0.48 +0.9
195,765 - CCNA_00182 0.48 -1.3
195,765 - CCNA_00182 0.48 +0.2
195,765 - CCNA_00182 0.48 +0.5
195,765 - CCNA_00182 0.48 +0.2
195,825 + CCNA_00182 0.56 +0.8
195,825 + CCNA_00182 0.56 -0.8
195,882 + CCNA_00182 0.64 +0.9
195,892 + CCNA_00182 0.65 +0.1
195,892 + CCNA_00182 0.65 +1.2
195,914 - CCNA_00182 0.68 +0.2
195,916 + CCNA_00182 0.69 +0.7
195,937 - CCNA_00182 0.72 -0.1
195,985 - CCNA_00182 0.78 -1.1
195,985 - CCNA_00182 0.78 +2.5
195,995 - CCNA_00182 0.80 -1.0
195,996 + CCNA_00182 0.80 +1.5
196,004 - CCNA_00182 0.81 -1.7
196,028 - CCNA_00182 0.84 -2.2
196,046 + CCNA_00182 0.87 -0.1
196,051 + CCNA_00182 0.87 +0.5
196,059 - CCNA_00182 0.89 -0.7
196,114 + +0.5
196,246 + +0.7
196,259 - -1.1
196,261 - -1.4
196,275 + -1.1
196,275 + -2.1
196,275 + -0.1
196,278 - +3.7
196,283 - -0.1
196,361 + CCNA_00183 0.15 +0.5
196,361 + CCNA_00183 0.15 +0.5
196,362 - CCNA_00183 0.15 -1.0
196,369 - CCNA_00183 0.16 -0.1
196,369 - CCNA_00183 0.16 +1.2
196,403 + CCNA_00183 0.20 -0.3
196,406 - CCNA_00183 0.20 +3.1
196,406 - CCNA_00183 0.20 -0.7
196,408 + CCNA_00183 0.21 +2.7

Or see this region's nucleotide sequence