Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00043 and CCNA_00044 are separated by 2 nucleotides CCNA_00044 and CCNA_00045 are separated by 258 nucleotides CCNA_00045 and CCNA_00046 are separated by 6 nucleotides
CCNA_00043: CCNA_00043 - N utilization substance protein A NusA, at 46,622 to 48,268
_00043
CCNA_00044: CCNA_00044 - ribosome maturation protein RimP, at 48,271 to 48,846
_00044
CCNA_00045: CCNA_00045 - inorganic pyrophosphatase, at 49,105 to 49,638
_00045
CCNA_00046: CCNA_00046 - hypothetical protein, at 49,645 to 50,031
_00046
Position (kb)
48
49 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 48.277 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.367 kb on - strand, within CCNA_00044 at 48.367 kb on - strand, within CCNA_00044 at 48.377 kb on - strand, within CCNA_00044 at 48.385 kb on - strand, within CCNA_00044 at 48.403 kb on - strand, within CCNA_00044 at 48.438 kb on - strand, within CCNA_00044 at 48.478 kb on - strand, within CCNA_00044 at 48.478 kb on - strand, within CCNA_00044 at 48.495 kb on - strand, within CCNA_00044 at 48.576 kb on - strand, within CCNA_00044 at 48.662 kb on - strand, within CCNA_00044 at 49.019 kb on - strand at 49.039 kb on + strand at 49.648 kb on + strand at 49.648 kb on + strand at 49.656 kb on - strand at 49.673 kb on + strand at 49.681 kb on - strand at 49.681 kb on - strand at 49.681 kb on - strand at 49.726 kb on + strand, within CCNA_00046 at 49.727 kb on - strand, within CCNA_00046 at 49.736 kb on - strand, within CCNA_00046 at 49.816 kb on - strand, within CCNA_00046 at 49.837 kb on + strand, within CCNA_00046 at 49.837 kb on + strand, within CCNA_00046 at 49.840 kb on - strand, within CCNA_00046 at 49.845 kb on - strand, within CCNA_00046 at 49.845 kb on - strand, within CCNA_00046
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 48,277 - +4.7 48,302 - +4.2 48,302 - +1.1 48,302 - +0.7 48,302 - +2.5 48,302 - +1.9 48,302 - +2.6 48,302 - +3.7 48,302 - +1.4 48,367 - CCNA_00044 0.17 +1.8 48,367 - CCNA_00044 0.17 +2.1 48,377 - CCNA_00044 0.18 +1.3 48,385 - CCNA_00044 0.20 -0.2 48,403 - CCNA_00044 0.23 -0.9 48,438 - CCNA_00044 0.29 +2.4 48,478 - CCNA_00044 0.36 +1.8 48,478 - CCNA_00044 0.36 +2.5 48,495 - CCNA_00044 0.39 +4.5 48,576 - CCNA_00044 0.53 +3.1 48,662 - CCNA_00044 0.68 +1.9 49,019 - +0.5 49,039 + -0.5 49,648 + +1.3 49,648 + +1.5 49,656 - -0.5 49,673 + -0.4 49,681 - -0.7 49,681 - +0.0 49,681 - +1.2 49,726 + CCNA_00046 0.21 -0.2 49,727 - CCNA_00046 0.21 +1.5 49,736 - CCNA_00046 0.24 +0.3 49,816 - CCNA_00046 0.44 -1.1 49,837 + CCNA_00046 0.50 +0.1 49,837 + CCNA_00046 0.50 +0.4 49,840 - CCNA_00046 0.50 -1.4 49,845 - CCNA_00046 0.52 -0.5 49,845 - CCNA_00046 0.52 +0.9
Or see this region's nucleotide sequence