Strain Fitness in Shewanella loihica PV-4 around Shew_3830

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
4,560,007	-		Shew_3828	0.54	+0.3
4,560,012	+		Shew_3828	0.54	+0.4
4,560,028	-		Shew_3828	0.56	-0.9
4,560,028	-		Shew_3828	0.56	-1.0
4,560,059	+		Shew_3828	0.60	-0.0
4,560,066	+		Shew_3828	0.61	-1.5
4,560,066	+		Shew_3828	0.61	-0.0
4,560,282	+		Shew_3828	0.87	+0.2
4,560,283	-		Shew_3828	0.87	-0.3
4,560,327	-				-0.0
4,560,327	-				-3.2
4,560,344	-				+0.1
4,560,450	-				+0.3
4,560,463	+				-1.1
4,560,471	-				-0.2
4,560,553	+				-0.3
4,560,588	-		Shew_3829	0.13	-0.4
4,560,611	+		Shew_3829	0.20	+0.2
4,560,611	+		Shew_3829	0.20	+0.6
4,560,632	-		Shew_3829	0.27	-0.3
4,560,743	-		Shew_3829	0.63	-0.0
4,561,121	+		Shew_3830	0.18	-0.4
4,561,172	+		Shew_3830	0.25	+0.1
4,561,180	-		Shew_3830	0.26	-0.1
4,561,180	-		Shew_3830	0.26	-0.0
4,561,252	+		Shew_3830	0.36	-1.0
4,561,284	+		Shew_3830	0.40	+0.0
4,561,354	+		Shew_3830	0.50	-0.6
4,561,460	-		Shew_3830	0.64	-0.0
4,561,519	-		Shew_3830	0.72	+1.3
4,561,592	-		Shew_3830	0.82	-0.1
4,561,615	+		Shew_3830	0.85	-0.1
4,561,617	+		Shew_3830	0.86	-0.1
4,561,617	+		Shew_3830	0.86	+2.3
4,561,623	-		Shew_3830	0.86	+0.6
4,561,625	-		Shew_3830	0.87	+0.2
4,561,625	-		Shew_3830	0.87	-0.6
4,561,625	-		Shew_3830	0.87	+0.1
4,561,625	-		Shew_3830	0.87	+0.6
4,561,629	+		Shew_3830	0.87	-0.2
4,561,629	+		Shew_3830	0.87	+0.8
4,561,637	-		Shew_3830	0.88	+0.8
4,561,637	-		Shew_3830	0.88	+1.1
4,561,637	-		Shew_3830	0.88	+0.1
4,561,647	-		Shew_3830	0.90	+1.3
4,561,723	+				-0.1
4,561,731	-				+0.1
4,561,829	+		Shew_3831	0.81	+0.2
4,561,829	+		Shew_3831	0.81	+0.1
4,561,829	+		Shew_3831	0.81	-0.5
4,561,829	+		Shew_3831	0.81	-0.3
4,561,829	+		Shew_3831	0.81	+0.0
4,561,833	+		Shew_3831	0.84	+0.5
4,561,833	+		Shew_3831	0.84	+0.9
4,561,833	+		Shew_3831	0.84	+0.3
4,561,833	+		Shew_3831	0.84	+0.2
4,561,837	-		Shew_3831	0.88	+0.2
4,561,837	-		Shew_3831	0.88	-0.1
4,561,841	-				+2.1
4,561,841	-				+0.1
4,561,841	-				-0.4
4,561,873	-				+0.2
4,561,874	+				+0.4
4,561,875	+				-0.3
4,561,875	+				-0.2
4,561,875	+				-0.3
4,561,875	+				-0.7
4,561,875	+				+0.3
4,561,875	+				-0.1
4,561,875	+				-0.3
4,561,875	+				-0.4
4,561,875	+				-0.8
4,561,875	+				+0.2
4,561,875	+				-0.0
4,561,875	+				-0.3
4,561,875	+				-0.5
4,561,875	+				-0.5
4,561,875	+				+0.8
4,561,875	+				+1.3
4,561,878	-				+0.6
4,561,880	+				+0.2
4,561,883	-				+0.1
4,561,883	-				+0.1
4,561,883	-				+0.6
4,561,883	-				+0.2
4,561,883	-				+0.2
4,561,883	-				-0.3
4,561,883	-				+0.5
4,561,883	-				+0.2
4,561,883	-				-1.2
4,561,883	-				+0.1
4,561,883	-				+0.5
4,561,883	-				-0.2
4,561,883	-				-0.5
4,561,883	-				-0.4
4,561,883	-				-0.9
4,561,883	-				+0.3
4,561,892	+				+0.6
4,561,905	-				-0.6
4,561,905	-				-0.0
4,561,910	+				+0.1
4,561,981	-				+0.1
4,562,050	+				-0.0
4,562,058	-				-1.3
4,562,058	-				+0.5
4,562,129	-				+1.2
4,562,131	+				+0.1
4,562,151	+				-0.1
4,562,167	+				-0.8
4,562,167	+				+0.3
4,562,167	+				+1.2
4,562,175	-				-0.2
4,562,175	-				+0.1
4,562,584	+		Shew_3832	0.18	+0.3
4,562,598	+		Shew_3832	0.18	+0.2
4,562,641	+		Shew_3832	0.20	-0.8