Strain Fitness in Shewanella loihica PV-4 around Shew_3416

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
4,069,314	-				+0.2
4,069,314	-				-0.0
4,069,331	+				-1.8
4,069,382	+				+0.0
4,069,461	-				-0.1
4,069,476	-				+0.6
4,069,476	-				+0.8
4,069,503	+		Shew_3415	0.12	+0.6
4,069,511	-		Shew_3415	0.13	-0.2
4,069,511	-		Shew_3415	0.13	-0.3
4,069,522	+		Shew_3415	0.14	+0.3
4,069,593	+		Shew_3415	0.23	+1.0
4,069,857	-		Shew_3415	0.56	-0.4
4,069,858	+		Shew_3415	0.56	-3.4
4,070,004	-		Shew_3415	0.74	+0.0
4,070,077	+		Shew_3415	0.83	-0.2
4,070,178	+				+0.2
4,070,230	-				+0.0
4,070,342	+				+1.0
4,070,383	+				-0.4
4,070,391	-				-0.5
4,071,187	-		Shew_3416	0.34	-0.7
4,071,546	+		Shew_3416	0.48	-0.2
4,071,630	+		Shew_3416	0.51	-1.2
4,071,865	-		Shew_3416	0.61	-0.8
4,071,939	+		Shew_3416	0.63	+0.2
4,071,992	+		Shew_3416	0.66	-1.1
4,072,000	-		Shew_3416	0.66	-0.1
4,072,000	-		Shew_3416	0.66	+0.0
4,072,136	-		Shew_3416	0.71	-0.1
4,072,206	-		Shew_3416	0.74	-0.1
4,072,271	-		Shew_3416	0.76	+0.3
4,072,645	-				-0.0
4,072,676	+				+0.1
4,072,684	-				+1.6
4,072,684	-				-1.7
4,072,833	+				+0.2
4,073,388	+		Shew_3417	0.29	-0.4
4,073,623	+		Shew_3417	0.61	-1.2
4,073,656	+		Shew_3417	0.66	-0.1
4,073,784	+		Shew_3417	0.83	+0.1
4,073,812	+		Shew_3417	0.87	+0.1
4,073,861	-				-0.3