Strain Fitness in Shewanella loihica PV-4 around Shew_3292

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3291 and Shew_3292 are separated by 66 nucleotidesShew_3292 and rpsI are separated by 106 nucleotidesrpsI and rplM are separated by 15 nucleotides Shew_3291: Shew_3291 - adenylosuccinate synthetase (RefSeq), at 3,935,074 to 3,936,369 _3291 Shew_3292: Shew_3292 - hypothetical protein (RefSeq), at 3,936,436 to 3,936,624 _3292 Shew_3293: rpsI - 30S ribosomal protein S9 (RefSeq), at 3,936,731 to 3,937,123 rpsI Shew_3294: rplM - 50S ribosomal protein L13 (RefSeq), at 3,937,139 to 3,937,570 rplM Position (kb) 3936 3937Strain fitness (log2 ratio) -1 0 1at 3936.474 kb on + strand, within Shew_3292at 3936.572 kb on - strand, within Shew_3292

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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3,936,474 + Shew_3292 0.20 -0.8
3,936,572 - Shew_3292 0.72 -1.3

Or see this region's nucleotide sequence