Strain Fitness in Shewanella loihica PV-4 around Shew_3154

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
3,754,835	+		Shew_3153	0.31	-0.3
3,754,928	-		Shew_3153	0.40	+0.4
3,754,956	+		Shew_3153	0.43	+0.2
3,755,005	+		Shew_3153	0.47	-0.2
3,755,012	+		Shew_3153	0.48	-0.5
3,755,012	+		Shew_3153	0.48	-1.3
3,755,012	+		Shew_3153	0.48	-0.5
3,755,068	+		Shew_3153	0.54	-0.0
3,755,076	-		Shew_3153	0.55	+0.2
3,755,076	-		Shew_3153	0.55	-2.0
3,755,156	+		Shew_3153	0.62	-0.5
3,755,164	-		Shew_3153	0.63	-0.2
3,755,208	-		Shew_3153	0.68	+0.6
3,755,268	-		Shew_3153	0.74	-0.4
3,755,510	-				-0.5
3,755,560	+				-0.3
3,755,568	-				+0.2
3,755,627	-				-1.3
3,755,718	-				-0.2
3,755,761	-				+0.3
3,755,976	+		Shew_3154	0.30	-0.1
3,755,984	-		Shew_3154	0.31	+0.4
3,755,987	+		Shew_3154	0.31	+0.5
3,756,043	-		Shew_3154	0.37	+0.2
3,756,263	+		Shew_3154	0.60	-0.1
3,756,263	+		Shew_3154	0.60	+0.1
3,756,263	+		Shew_3154	0.60	+0.3
3,756,263	+		Shew_3154	0.60	-0.3
3,756,263	+		Shew_3154	0.60	-0.5
3,756,263	+		Shew_3154	0.60	-0.1
3,756,348	+		Shew_3154	0.68	-2.5
3,756,385	+		Shew_3154	0.72	+0.0
3,756,412	-		Shew_3154	0.75	+1.3
3,756,412	-		Shew_3154	0.75	+0.4
3,756,416	+		Shew_3154	0.75	-0.4
3,756,424	-		Shew_3154	0.76	+0.5
3,756,432	-		Shew_3154	0.77	+0.1
3,756,441	+		Shew_3154	0.78	+0.2
3,756,449	-		Shew_3154	0.79	-0.2
3,756,464	+		Shew_3154	0.80	+0.2
3,756,464	+		Shew_3154	0.80	-0.0
3,756,464	+		Shew_3154	0.80	+0.5
3,756,464	+		Shew_3154	0.80	-0.2
3,756,464	+		Shew_3154	0.80	+0.3
3,756,464	+		Shew_3154	0.80	-0.6
3,756,464	+		Shew_3154	0.80	+2.6
3,756,472	-		Shew_3154	0.81	+1.0
3,756,472	-		Shew_3154	0.81	+0.1
3,756,472	-		Shew_3154	0.81	-0.2
3,756,472	-		Shew_3154	0.81	-0.3
3,756,486	+		Shew_3154	0.82	+0.2
3,756,494	-		Shew_3154	0.83	+0.2
3,756,494	-		Shew_3154	0.83	+0.1
3,756,494	-		Shew_3154	0.83	+1.7
3,756,519	+		Shew_3154	0.86	+0.2
3,756,521	+		Shew_3154	0.86	+0.4
3,756,521	+		Shew_3154	0.86	-0.1
3,756,521	+		Shew_3154	0.86	+0.4
3,756,521	+		Shew_3154	0.86	+0.3
3,756,521	+		Shew_3154	0.86	-0.6
3,756,521	+		Shew_3154	0.86	-0.1
3,756,521	+		Shew_3154	0.86	-0.2
3,756,521	+		Shew_3154	0.86	+0.2
3,756,521	+		Shew_3154	0.86	+0.1
3,756,521	+		Shew_3154	0.86	-0.1
3,756,521	+		Shew_3154	0.86	+1.1
3,756,521	+		Shew_3154	0.86	+0.1
3,756,521	+		Shew_3154	0.86	+0.7
3,756,521	+		Shew_3154	0.86	+0.5
3,756,521	+		Shew_3154	0.86	-0.4
3,756,521	+		Shew_3154	0.86	-0.3
3,756,529	-		Shew_3154	0.87	-0.4
3,756,529	-		Shew_3154	0.87	-1.0
3,756,529	-		Shew_3154	0.87	+0.1
3,756,529	-		Shew_3154	0.87	+2.1
3,756,529	-		Shew_3154	0.87	-0.2
3,756,529	-		Shew_3154	0.87	-0.4
3,756,529	-		Shew_3154	0.87	-0.0
3,756,529	-		Shew_3154	0.87	+1.3
3,756,529	-		Shew_3154	0.87	-1.0
3,756,529	-		Shew_3154	0.87	+0.2
3,756,529	-		Shew_3154	0.87	+0.2
3,756,529	-		Shew_3154	0.87	-0.4
3,756,529	-		Shew_3154	0.87	+0.9
3,756,529	-		Shew_3154	0.87	-0.1
3,756,529	-		Shew_3154	0.87	-0.6
3,756,529	-		Shew_3154	0.87	+0.5
3,756,529	-		Shew_3154	0.87	+0.2
3,756,529	-		Shew_3154	0.87	+0.6
3,756,529	-		Shew_3154	0.87	-0.3
3,756,532	-		Shew_3154	0.87	+0.6
3,756,539	+		Shew_3154	0.88	-0.1
3,756,547	-		Shew_3154	0.89	+0.5
3,756,547	-		Shew_3154	0.89	+0.4
3,756,550	+		Shew_3154	0.89	-0.6
3,756,550	+		Shew_3154	0.89	-0.1
3,756,555	+		Shew_3154	0.90	-0.5
3,756,558	-		Shew_3154	0.90	+0.2
3,756,561	-				-1.2
3,756,580	+				+0.5
3,756,616	-				-0.5
3,756,634	-				-0.1
3,756,636	+				+0.4
3,756,649	-				-0.2
3,756,675	+				+1.1
3,756,680	+				+0.4
3,756,690	+				-0.1
3,756,698	-				+1.1
3,756,935	+				+0.7
3,757,024	+				-0.1
3,757,024	+				+1.1
3,757,024	+				+0.3
3,757,024	+				+0.8
3,757,024	+				+1.0
3,757,032	-				+0.1
3,757,032	-				-0.8
3,757,032	-				-0.1
3,757,032	-				+0.3
3,757,036	+				+0.3
3,757,036	+				+0.4
3,757,036	+				+0.2
3,757,036	+				-1.0
3,757,036	+				+0.2
3,757,039	+				-0.0
3,757,044	-				+0.9
3,757,049	-				-0.1
3,757,060	+				+0.2
3,757,060	+				-0.6
3,757,060	+				-0.1
3,757,060	+				+0.3
3,757,060	+				+1.5
3,757,068	-				+0.2
3,757,068	-				+0.1
3,757,068	-				+0.7
3,757,095	-		Shew_3155	0.11	+0.6
3,757,114	+		Shew_3155	0.15	+1.2
3,757,121	+		Shew_3155	0.16	-0.3
3,757,122	-		Shew_3155	0.16	+0.4
3,757,134	-		Shew_3155	0.19	+0.3
3,757,143	-		Shew_3155	0.20	-0.6
3,757,154	-		Shew_3155	0.23	+0.1
3,757,193	+		Shew_3155	0.30	-0.6
3,757,193	+		Shew_3155	0.30	-0.3
3,757,243	-		Shew_3155	0.40	-0.2
3,757,269	+		Shew_3155	0.45	-0.4
3,757,277	-		Shew_3155	0.47	+0.3
3,757,323	+		Shew_3155	0.56	+0.1
3,757,333	+		Shew_3155	0.58	-0.0
3,757,435	-		Shew_3155	0.78	+0.2
3,757,519	+				+0.2
3,757,613	-				-1.0