Strain Fitness in Shewanella loihica PV-4 around Shew_3088

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
3,668,510	+		Shew_3087	0.59	-0.3
3,668,555	-		Shew_3087	0.61	-0.4
3,668,568	-		Shew_3087	0.62	-0.1
3,668,568	-		Shew_3087	0.62	+0.3
3,668,652	+		Shew_3087	0.66	-0.8
3,668,652	+		Shew_3087	0.66	-1.3
3,668,660	-		Shew_3087	0.67	-0.3
3,668,671	+		Shew_3087	0.67	-0.1
3,668,712	-		Shew_3087	0.70	-0.5
3,668,726	-		Shew_3087	0.70	+0.2
3,668,988	+		Shew_3087	0.84	+0.4
3,668,991	-		Shew_3087	0.85	-0.1
3,669,302	-				-0.3
3,669,308	-				-0.3
3,669,403	-				+0.5
3,669,504	-				-0.3
3,669,534	+		Shew_3088	0.11	-1.3
3,669,825	-		Shew_3088	0.33	+0.2
3,669,949	-		Shew_3088	0.43	-0.1
3,669,971	-		Shew_3088	0.45	-0.8
3,670,015	+		Shew_3088	0.48	-0.7
3,670,419	+		Shew_3088	0.79	-0.0
3,670,813	+				+0.3
3,670,813	+				-1.1
3,670,821	-				-2.1
3,670,821	-				-0.6
3,670,821	-				+0.4
3,670,823	+				-0.5
3,670,872	+				-3.9
3,670,880	-				-0.3
3,670,880	-				+0.6
3,671,269	+				+0.3
3,671,325	-		Shew_3090	0.17	+0.1