Strain Fitness in Shewanella loihica PV-4 around Shew_2751

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2750 and rdgC are separated by 301 nucleotidesrdgC and Shew_2752 are separated by 160 nucleotides Shew_2750: Shew_2750 - porin (RefSeq), at 3,250,922 to 3,251,872 _2750 Shew_2751: rdgC - recombination associated protein (RefSeq), at 3,252,174 to 3,253,085 rdgC Shew_2752: Shew_2752 - peptidase M61 domain-containing protein (RefSeq), at 3,253,246 to 3,255,042 _2752 Position (kb) 3252 3253 3254Strain fitness (log2 ratio) -3 -2 -1 0 1at 3251.213 kb on - strand, within Shew_2750at 3251.701 kb on + strand, within Shew_2750at 3251.714 kb on + strand, within Shew_2750at 3251.787 kb on + strandat 3251.794 kb on + strandat 3252.143 kb on - strandat 3252.143 kb on - strandat 3252.143 kb on - strandat 3252.237 kb on + strandat 3252.342 kb on - strand, within rdgCat 3252.475 kb on - strand, within rdgCat 3253.669 kb on - strand, within Shew_2752at 3253.856 kb on - strand, within Shew_2752

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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3,251,213 - Shew_2750 0.31 +0.3
3,251,701 + Shew_2750 0.82 -0.4
3,251,714 + Shew_2750 0.83 -0.2
3,251,787 + -0.5
3,251,794 + -0.3
3,252,143 - -3.2
3,252,143 - -0.1
3,252,143 - -1.3
3,252,237 + -1.5
3,252,342 - rdgC Shew_2751 0.18 -0.7
3,252,475 - rdgC Shew_2751 0.33 -1.2
3,253,669 - Shew_2752 0.24 -1.1
3,253,856 - Shew_2752 0.34 +0.2

Or see this region's nucleotide sequence