Strain Fitness in Shewanella loihica PV-4 around Shew_2682

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
3,174,469	-		Shew_2681	0.48	+0.1
3,174,476	-		Shew_2681	0.48	-0.2
3,174,525	-		Shew_2681	0.52	-0.4
3,174,525	-		Shew_2681	0.52	+0.1
3,174,588	+		Shew_2681	0.57	+0.4
3,174,588	+		Shew_2681	0.57	-0.1
3,174,596	-		Shew_2681	0.58	-1.5
3,174,596	-		Shew_2681	0.58	-0.7
3,174,651	+		Shew_2681	0.62	-0.1
3,174,651	+		Shew_2681	0.62	-1.2
3,174,651	+		Shew_2681	0.62	+0.0
3,174,659	-		Shew_2681	0.62	-0.1
3,174,676	-		Shew_2681	0.64	-0.4
3,174,686	+		Shew_2681	0.64	+0.2
3,174,686	+		Shew_2681	0.64	-0.4
3,174,694	-		Shew_2681	0.65	-0.4
3,174,912	-		Shew_2681	0.82	-0.1
3,175,004	-		Shew_2681	0.89	-0.4
3,175,036	+				+0.1
3,175,075	+				+0.1
3,175,114	+				-0.3
3,175,114	+				-0.6
3,175,122	+				+0.1
3,175,129	+				+0.8
3,175,143	-				-0.4
3,175,144	+				-0.1
3,175,144	+				-0.1
3,175,144	+				+0.4
3,175,144	+				-0.0
3,175,149	+				-0.1
3,175,149	+				+0.2
3,175,149	+				-0.6
3,175,149	+				+0.4
3,175,149	+				-0.0
3,175,149	+				-0.2
3,175,149	+				-0.8
3,175,152	-				+0.1
3,175,152	-				-0.3
3,175,152	-				-0.9
3,175,152	-				-0.1
3,175,152	-				-0.1
3,175,152	-				-0.4
3,175,152	-				+0.1
3,175,154	+				+0.2
3,175,154	+				-0.8
3,175,154	+				+0.5
3,175,154	+				+0.3
3,175,154	+				+0.0
3,175,154	+				+0.2
3,175,157	+				-0.1
3,175,162	-				+0.2
3,175,162	-				+0.0
3,175,162	-				+1.6
3,175,162	-				-0.1
3,175,162	-				-0.0
3,175,197	+				+0.3
3,175,197	+				+0.2
3,175,202	+				-0.4
3,175,205	-				-0.1
3,175,205	-				-0.3
3,175,205	-				+0.6
3,175,205	-				+0.3
3,175,205	-				-0.6
3,175,210	-				+0.3
3,175,210	-				+0.1
3,175,216	+				+0.7
3,175,281	+				+0.2
3,175,281	+				-0.0
3,175,281	+				-1.1
3,175,281	+				+0.4
3,175,281	+				-0.8
3,175,289	+				+0.3
3,175,289	-				+0.2
3,175,291	+				-0.2
3,175,291	+				+0.1
3,175,296	+				-0.9
3,175,297	-				-0.7
3,175,297	+				+0.1
3,175,297	-				+0.2
3,175,297	-				+0.2
3,175,297	-				+0.0
3,175,297	-				-0.4
3,175,297	-				+0.7
3,175,304	-				+1.0
3,175,305	+				-0.6
3,175,306	-				-0.3
3,175,308	-				+1.6
3,175,313	-				-1.0
3,175,313	-				+0.1
3,175,446	+				-0.2
3,175,446	+				-0.2
3,175,446	+				+0.4
3,175,456	+				+1.3
3,175,459	+				-0.3
3,175,464	+				+0.3
3,175,464	+				+0.1
3,175,464	+				-0.2
3,175,464	+				+0.7
3,175,466	+				-0.6
3,175,466	+				+0.4
3,175,472	-				+1.8
3,175,472	-				+0.8
3,175,474	+				+0.3
3,175,483	-				-0.1
3,175,561	+		Shew_2682	0.13	+0.2
3,175,569	-		Shew_2682	0.14	+3.5
3,175,569	-		Shew_2682	0.14	+0.4
3,175,581	+		Shew_2682	0.15	+1.8
3,175,583	-		Shew_2682	0.15	+0.4
3,175,583	+		Shew_2682	0.15	+0.3
3,175,589	-		Shew_2682	0.15	+0.5
3,175,602	-		Shew_2682	0.16	+0.2
3,175,604	+		Shew_2682	0.17	+0.4
3,175,642	+		Shew_2682	0.20	+0.2
3,175,653	+		Shew_2682	0.21	+0.2
3,175,653	+		Shew_2682	0.21	-0.3
3,175,685	+		Shew_2682	0.24	-0.8
3,175,685	+		Shew_2682	0.24	-0.3
3,175,722	+		Shew_2682	0.27	-0.1
3,175,730	-		Shew_2682	0.28	+0.3
3,175,738	+		Shew_2682	0.29	+0.5
3,175,738	+		Shew_2682	0.29	+0.5
3,175,738	+		Shew_2682	0.29	-0.2
3,175,739	-		Shew_2682	0.29	+0.3
3,175,788	+		Shew_2682	0.33	-0.1
3,175,801	-		Shew_2682	0.34	-1.3
3,175,895	-		Shew_2682	0.42	+0.3
3,176,125	-		Shew_2682	0.63	-0.0
3,176,135	-		Shew_2682	0.64	-0.1
3,176,239	-		Shew_2682	0.73	-1.8
3,176,292	+		Shew_2682	0.78	-0.8
3,176,300	-		Shew_2682	0.78	+0.1
3,176,357	-		Shew_2682	0.83	+0.4
3,176,790	+		Shew_2683	0.22	+1.9
3,176,790	+		Shew_2683	0.22	-0.7
3,176,790	+		Shew_2683	0.22	-0.3
3,176,798	-		Shew_2683	0.25	-0.2
3,176,798	-		Shew_2683	0.25	-0.1
3,176,803	-		Shew_2683	0.27	+0.3
3,176,836	-		Shew_2683	0.40	-1.4
3,176,869	+		Shew_2683	0.54	-0.3
3,177,160	+				+0.6
3,177,168	-				-0.3
3,177,214	+				+0.6
3,177,258	-				-0.2
3,177,268	+				-0.5
3,177,423	-		Shew_2684	0.22	+0.2