Strain Fitness in Shewanella loihica PV-4 around Shew_2139

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2137 and Shew_2138 are separated by 44 nucleotidesShew_2138 and Shew_2139 are separated by 97 nucleotidesShew_2139 and Shew_2140 are separated by 74 nucleotides Shew_2137: Shew_2137 - glutathione S-transferase domain-containing protein (RefSeq), at 2,484,221 to 2,485,240 _2137 Shew_2138: Shew_2138 - hypothetical protein (RefSeq), at 2,485,285 to 2,485,509 _2138 Shew_2139: Shew_2139 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 2,485,607 to 2,486,089 _2139 Shew_2140: Shew_2140 - hypothetical protein (RefSeq), at 2,486,164 to 2,487,036 _2140 Position (kb) 2485 2486 2487Strain fitness (log2 ratio) -2 -1 0 1at 2485.087 kb on + strand, within Shew_2137at 2485.692 kb on - strand, within Shew_2139at 2485.781 kb on + strand, within Shew_2139at 2485.940 kb on - strand, within Shew_2139at 2486.008 kb on - strand, within Shew_2139at 2486.641 kb on - strand, within Shew_2140at 2486.837 kb on + strand, within Shew_2140

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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2,485,087 + Shew_2137 0.85 +0.1
2,485,692 - Shew_2139 0.18 -0.2
2,485,781 + Shew_2139 0.36 -0.4
2,485,940 - Shew_2139 0.69 -2.2
2,486,008 - Shew_2139 0.83 -0.3
2,486,641 - Shew_2140 0.55 +0.8
2,486,837 + Shew_2140 0.77 -0.1

Or see this region's nucleotide sequence