Strain Fitness in Shewanella loihica PV-4 around Shew_1635

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1634 and Shew_1635 are separated by 27 nucleotidesShew_1635 and Shew_1636 are separated by 332 nucleotidesShew_1636 and Shew_1637 are separated by 31 nucleotides Shew_1634: Shew_1634 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,869,062 to 1,870,315 _1634 Shew_1635: Shew_1635 - diguanylate cyclase (RefSeq), at 1,870,343 to 1,871,698 _1635 Shew_1636: Shew_1636 - hypothetical protein (RefSeq), at 1,872,031 to 1,872,537 _1636 Shew_1637: Shew_1637 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 1,872,569 to 1,874,854 _1637 Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -1 0 1at 1870.499 kb on - strand, within Shew_1635at 1870.708 kb on + strand, within Shew_1635at 1871.002 kb on + strand, within Shew_1635at 1871.143 kb on - strand, within Shew_1635at 1871.199 kb on - strand, within Shew_1635

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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1,870,499 - Shew_1635 0.12 -0.1
1,870,708 + Shew_1635 0.27 +0.6
1,871,002 + Shew_1635 0.49 +0.8
1,871,143 - Shew_1635 0.59 +0.5
1,871,199 - Shew_1635 0.63 -0.2

Or see this region's nucleotide sequence