Strain Fitness in Shewanella loihica PV-4 around Shew_1607

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1605 and Shew_1606 are separated by 185 nucleotidesShew_1606 and Shew_1607 are separated by 77 nucleotidesShew_1607 and Shew_1608 are separated by 23 nucleotides Shew_1605: Shew_1605 - beta-ketoacyl synthase (RefSeq), at 1,836,749 to 1,837,990 _1605 Shew_1606: Shew_1606 - hypothetical protein (RefSeq), at 1,838,176 to 1,838,508 _1606 Shew_1607: Shew_1607 - thioesterase superfamily protein (RefSeq), at 1,838,586 to 1,839,074 _1607 Shew_1608: Shew_1608 - carbohydrate kinase, FGGY (RefSeq), at 1,839,098 to 1,840,681 _1608 Position (kb) 1838 1839 1840Strain fitness (log2 ratio) -1 0 1at 1838.259 kb on - strand, within Shew_1606at 1838.667 kb on + strand, within Shew_1607at 1838.706 kb on + strand, within Shew_1607at 1839.163 kb on + strandat 1839.388 kb on + strand, within Shew_1608at 1839.781 kb on - strand, within Shew_1608at 1839.955 kb on + strand, within Shew_1608at 1839.991 kb on - strand, within Shew_1608

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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1,838,259 - Shew_1606 0.25 -0.8
1,838,667 + Shew_1607 0.17 +0.8
1,838,706 + Shew_1607 0.25 +0.9
1,839,163 + -0.8
1,839,388 + Shew_1608 0.18 +0.3
1,839,781 - Shew_1608 0.43 +1.4
1,839,955 + Shew_1608 0.54 +0.0
1,839,991 - Shew_1608 0.56 +1.2

Or see this region's nucleotide sequence