Strain Fitness in Shewanella loihica PV-4 around Shew_1511

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1510 and Shew_1511 are separated by 221 nucleotidesShew_1511 and Shew_1512 are separated by 260 nucleotidesShew_1512 and Shew_1513 overlap by 1 nucleotides Shew_1510: Shew_1510 - peptidase M28 (RefSeq), at 1,732,190 to 1,733,851 _1510 Shew_1511: Shew_1511 - UMP phosphatase (RefSeq), at 1,734,073 to 1,734,831 _1511 Shew_1512: Shew_1512 - phosphoribosylglycinamide formyltransferase (RefSeq), at 1,735,092 to 1,735,736 _1512 Shew_1513: Shew_1513 - phosphoribosylaminoimidazole synthetase (RefSeq), at 1,735,736 to 1,736,773 _1513 Position (kb) 1734 1735Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1733.286 kb on - strand, within Shew_1510at 1733.816 kb on + strandat 1733.832 kb on - strandat 1734.148 kb on - strandat 1734.290 kb on + strand, within Shew_1511at 1734.367 kb on + strand, within Shew_1511at 1734.939 kb on - strandat 1735.002 kb on - strandat 1735.172 kb on + strand, within Shew_1512at 1735.666 kb on - strand, within Shew_1512

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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1,733,286 - Shew_1510 0.66 -0.2
1,733,816 + -0.7
1,733,832 - -0.7
1,734,148 - -0.2
1,734,290 + Shew_1511 0.29 -0.5
1,734,367 + Shew_1511 0.39 -2.6
1,734,939 - +0.2
1,735,002 - -2.9
1,735,172 + Shew_1512 0.12 +1.8
1,735,666 - Shew_1512 0.89 +1.8

Or see this region's nucleotide sequence