Strain Fitness in Shewanella loihica PV-4 around Shew_1243

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
1,441,239	+				-0.2
1,441,286	+				-0.0
1,441,319	+		Shew_1242	0.13	-0.5
1,441,327	-		Shew_1242	0.15	-0.2
1,441,331	+		Shew_1242	0.16	+0.0
1,441,339	+		Shew_1242	0.17	+1.5
1,441,432	+		Shew_1242	0.37	+0.4
1,441,617	-		Shew_1242	0.76	+0.0
1,441,713	+				-0.5
1,441,917	-				-0.7
1,442,020	-		Shew_1243	0.19	-0.6
1,442,289	+		Shew_1243	0.44	+1.3
1,442,289	+		Shew_1243	0.44	+1.8
1,442,360	+		Shew_1243	0.50	-1.0
1,442,425	+		Shew_1243	0.56	-1.0
1,442,510	-		Shew_1243	0.64	+0.1
1,442,570	+		Shew_1243	0.70	+0.0
1,442,653	+		Shew_1243	0.77	+0.1
1,442,754	+		Shew_1243	0.87	-0.1
1,442,754	+		Shew_1243	0.87	-0.5
1,442,754	+		Shew_1243	0.87	-0.3
1,442,754	+		Shew_1243	0.87	+0.1
1,442,754	+		Shew_1243	0.87	+0.0
1,442,754	+		Shew_1243	0.87	+1.2
1,442,762	-		Shew_1243	0.87	+0.4
1,442,762	-		Shew_1243	0.87	-0.5
1,442,762	-		Shew_1243	0.87	-0.9
1,443,117	+				-0.6
1,443,125	-				-0.2
1,443,131	-				-0.1
1,443,183	+				+0.5
1,443,183	+				-0.7
1,443,424	+				-0.2
1,443,791	+		Shew_1244	0.86	-1.2
1,443,811	+				+0.4