Strain Fitness in Shewanella loihica PV-4 around Shew_1201

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
1,393,205	+		Shew_1200	0.80	-2.1
1,393,234	-		Shew_1200	0.81	-1.0
1,393,513	-				-2.5
1,393,816	-				-1.0
1,393,860	-				-0.7
1,393,898	-				+1.2
1,394,062	+	rumA	Shew_1201	0.15	-1.6
1,394,229	-	rumA	Shew_1201	0.28	-1.3
1,394,535	-	rumA	Shew_1201	0.51	-1.4
1,394,642	-	rumA	Shew_1201	0.59	-1.9
1,394,863	+	rumA	Shew_1201	0.75	-1.0
1,395,105	+				-0.5
1,395,422	-				-0.5
1,395,616	+		Shew_1202	0.12	-0.3
1,395,698	+		Shew_1202	0.15	-0.1
1,395,714	+		Shew_1202	0.16	-0.7