Strain Fitness in Shewanella loihica PV-4 around Shew_1178

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
1,361,741	-		Shew_1177	0.38	-0.1
1,361,837	+		Shew_1177	0.45	-0.1
1,361,934	+		Shew_1177	0.53	-0.7
1,362,014	-		Shew_1177	0.60	-0.3
1,362,446	-				-0.6
1,362,514	+				-0.0
1,362,613	-				-0.1
1,362,644	+				-0.4
1,362,722	+				+0.1
1,363,335	+		Shew_1178	0.26	-0.3
1,363,592	-		Shew_1178	0.34	-0.2
1,363,809	+		Shew_1178	0.41	+0.1
1,363,952	+		Shew_1178	0.46	-0.3
1,363,960	-		Shew_1178	0.46	-0.8
1,363,972	-		Shew_1178	0.46	+0.1
1,364,019	-		Shew_1178	0.48	-1.3
1,364,288	+		Shew_1178	0.57	+0.3
1,364,296	-		Shew_1178	0.57	-0.2
1,364,627	+		Shew_1178	0.67	-1.1
1,364,955	+		Shew_1178	0.78	+0.1
1,365,082	-		Shew_1178	0.82	+0.1
1,365,318	+		Shew_1178	0.89	-0.1
1,365,548	-				+0.4
1,365,661	-				-0.1
1,365,681	+				-0.4
1,365,691	-				+0.1
1,365,745	+				-0.1
1,365,746	-				-0.0
1,365,808	+				+0.1
1,365,808	+				-0.7
1,365,816	-				+1.0
1,365,829	+				+0.7
1,365,860	+				+0.1
1,365,882	+				+0.7
1,365,922	-				+0.0
1,365,922	-				+0.2
1,365,922	-				-0.2
1,366,125	-				+1.3
1,366,567	+				-0.0
1,366,582	+				-0.0
1,366,590	+				+0.2
1,366,592	+				+0.8
1,366,597	-				-0.1
1,366,602	+				+0.3
1,366,605	-				+0.2
1,366,610	-				+0.4
1,366,610	-				-0.0
1,366,610	-				-0.4
1,366,610	-				-0.9
1,366,610	-				+0.1
1,366,616	+				+0.2