Strain Fitness in Shewanella loihica PV-4 around Shew_0887

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
1,006,317	+	djlA	Shew_0885	0.66	-0.6
1,006,546	+				-1.6
1,006,554	-				+0.2
1,006,564	-				+0.2
1,006,564	-				-0.0
1,006,619	+				-0.1
1,006,684	-		Shew_0886	0.12	-0.6
1,006,752	+		Shew_0886	0.23	+0.0
1,006,843	+		Shew_0886	0.37	+0.2
1,007,149	-		Shew_0886	0.86	-0.2
1,007,154	-		Shew_0886	0.87	-0.2
1,007,376	-		Shew_0887	0.12	+0.3
1,007,386	-		Shew_0887	0.14	+1.4
1,007,496	+		Shew_0887	0.25	-0.2
1,007,504	-		Shew_0887	0.26	-0.1
1,007,504	-		Shew_0887	0.26	-0.1
1,007,830	-		Shew_0887	0.60	+0.2
1,007,919	+		Shew_0887	0.69	+0.7
1,008,095	+		Shew_0887	0.88	+0.4
1,008,165	+				-0.1
1,008,173	-				+0.2
1,008,246	-				+0.8
1,008,403	+				-0.1
1,008,603	+		Shew_0888	0.23	+0.2
1,008,667	+		Shew_0888	0.29	+0.4
1,009,014	+		Shew_0888	0.58	+0.5
1,009,064	+		Shew_0888	0.62	+0.3
1,009,158	+		Shew_0888	0.70	-0.5