Strain Fitness in Shewanella loihica PV-4 around Shew_0879

Experiment: methylglyoxal 0.001 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntapaH and apaG are separated by 26 nucleotidesapaG and ksgA are separated by 51 nucleotidesksgA and Shew_0880 are separated by 2 nucleotides Shew_0877: apaH - diadenosine tetraphosphatase (RefSeq), at 997,017 to 997,841 apaH Shew_0878: apaG - ApaG (RefSeq), at 997,868 to 998,248 apaG Shew_0879: ksgA - dimethyladenosine transferase (RefSeq), at 998,300 to 999,109 ksgA Shew_0880: Shew_0880 - 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq), at 999,112 to 1,000,110 _0880 Position (kb) 998 999 1000Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 997.320 kb on - strand, within apaHat 997.448 kb on - strand, within apaHat 997.458 kb on - strand, within apaHat 997.615 kb on - strand, within apaH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
remove
997,320 - apaH Shew_0877 0.37 -3.8
997,448 - apaH Shew_0877 0.52 -3.9
997,458 - apaH Shew_0877 0.53 -3.2
997,615 - apaH Shew_0877 0.72 -2.6

Or see this region's nucleotide sequence