Strain Fitness in Shewanella loihica PV-4 around Shew_0877

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0876 and apaH are separated by 104 nucleotidesapaH and apaG are separated by 26 nucleotidesapaG and ksgA are separated by 51 nucleotides Shew_0876: Shew_0876 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 994,888 to 996,912 _0876 Shew_0877: apaH - diadenosine tetraphosphatase (RefSeq), at 997,017 to 997,841 apaH Shew_0878: apaG - ApaG (RefSeq), at 997,868 to 998,248 apaG Shew_0879: ksgA - dimethyladenosine transferase (RefSeq), at 998,300 to 999,109 ksgA Position (kb) 997 998Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 996.115 kb on - strand, within Shew_0876at 996.167 kb on + strand, within Shew_0876at 996.312 kb on + strand, within Shew_0876at 996.312 kb on + strand, within Shew_0876at 997.140 kb on + strand, within apaHat 997.320 kb on - strand, within apaHat 997.448 kb on - strand, within apaHat 997.458 kb on - strand, within apaHat 997.615 kb on - strand, within apaH

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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996,115 - Shew_0876 0.61 -0.0
996,167 + Shew_0876 0.63 +0.3
996,312 + Shew_0876 0.70 -1.5
996,312 + Shew_0876 0.70 +0.2
997,140 + apaH Shew_0877 0.15 -1.9
997,320 - apaH Shew_0877 0.37 -3.8
997,448 - apaH Shew_0877 0.52 -3.9
997,458 - apaH Shew_0877 0.53 -3.2
997,615 - apaH Shew_0877 0.72 -2.6

Or see this region's nucleotide sequence