Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0743 and Shew_0744 are separated by 103 nucleotides Shew_0744 and Shew_0745 are separated by 183 nucleotides Shew_0745 and Shew_0746 are separated by 25 nucleotides Shew_0746 and Shew_0747 are separated by 206 nucleotides
Shew_0743: Shew_0743 - sodium:dicarboxylate symporter (RefSeq), at 844,566 to 845,867
_0743
Shew_0744: Shew_0744 - protein of unknown function DUF306, Meta and HslJ (RefSeq), at 845,971 to 846,384
_0744
Shew_0745: Shew_0745 - hypothetical protein (RefSeq), at 846,568 to 846,807
_0745
Shew_0746: Shew_0746 - diguanylate cyclase (RefSeq), at 846,833 to 847,777
_0746
Shew_0747: Shew_0747 - GGDEF domain-containing protein (RefSeq), at 847,984 to 848,940
_0747
Position (kb) 846
847
848 Strain fitness (log2 ratio) -1
0
1 at 846.029 kb on + strand, within Shew_0744 at 846.254 kb on + strand, within Shew_0744 at 846.262 kb on - strand, within Shew_0744 at 846.262 kb on - strand, within Shew_0744 at 846.262 kb on - strand, within Shew_0744 at 846.262 kb on - strand, within Shew_0744 at 846.540 kb on + strand at 846.831 kb on + strand at 846.831 kb on + strand at 846.831 kb on + strand at 846.939 kb on - strand, within Shew_0746 at 846.949 kb on - strand, within Shew_0746 at 847.065 kb on - strand, within Shew_0746 at 847.553 kb on - strand, within Shew_0746 at 847.555 kb on + strand, within Shew_0746 at 847.618 kb on - strand, within Shew_0746 at 848.310 kb on + strand, within Shew_0747 at 848.465 kb on - strand, within Shew_0747 at 848.569 kb on + strand, within Shew_0747 at 848.577 kb on - strand, within Shew_0747 at 848.681 kb on + strand, within Shew_0747 at 848.731 kb on + strand, within Shew_0747
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 846,029 + Shew_0744 0.14 +1.0 846,254 + Shew_0744 0.68 +0.2 846,262 - Shew_0744 0.70 -1.4 846,262 - Shew_0744 0.70 +0.6 846,262 - Shew_0744 0.70 +1.4 846,262 - Shew_0744 0.70 +0.5 846,540 + +0.8 846,831 + +0.8 846,831 + +0.4 846,831 + -0.4 846,939 - Shew_0746 0.11 +1.3 846,949 - Shew_0746 0.12 +0.7 847,065 - Shew_0746 0.25 -0.2 847,553 - Shew_0746 0.76 +0.1 847,555 + Shew_0746 0.76 +0.4 847,618 - Shew_0746 0.83 -0.2 848,310 + Shew_0747 0.34 +0.7 848,465 - Shew_0747 0.50 +0.2 848,569 + Shew_0747 0.61 +0.2 848,577 - Shew_0747 0.62 -0.6 848,681 + Shew_0747 0.73 -0.0 848,731 + Shew_0747 0.78 -0.1
Or see this region's nucleotide sequence