Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0726 and Shew_0727 overlap by 1 nucleotides Shew_0727 and Shew_0728 are separated by 74 nucleotides
Shew_0726: Shew_0726 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 826,091 to 827,575
_0726
Shew_0727: Shew_0727 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 827,575 to 828,948
_0727
Shew_0728: Shew_0728 - dihydroorotase (RefSeq), at 829,023 to 830,051
_0728
Position (kb) 827
828
829 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 826.576 kb on - strand, within Shew_0726 at 826.622 kb on - strand, within Shew_0726 at 826.950 kb on - strand, within Shew_0726 at 827.125 kb on + strand, within Shew_0726 at 827.149 kb on + strand, within Shew_0726 at 827.157 kb on + strand, within Shew_0726 at 827.157 kb on + strand, within Shew_0726 at 827.286 kb on + strand, within Shew_0726 at 827.309 kb on - strand, within Shew_0726 at 827.639 kb on + strand at 827.684 kb on - strand at 828.259 kb on - strand, within Shew_0727 at 828.418 kb on - strand, within Shew_0727 at 828.679 kb on + strand, within Shew_0727 at 828.805 kb on + strand, within Shew_0727 at 829.397 kb on - strand, within Shew_0728 at 829.426 kb on - strand, within Shew_0728 at 829.457 kb on - strand, within Shew_0728 at 829.635 kb on - strand, within Shew_0728 at 829.761 kb on - strand, within Shew_0728 at 829.880 kb on + strand, within Shew_0728
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 826,576 - Shew_0726 0.33 -0.7 826,622 - Shew_0726 0.36 -0.0 826,950 - Shew_0726 0.58 +0.2 827,125 + Shew_0726 0.70 -0.2 827,149 + Shew_0726 0.71 -0.2 827,157 + Shew_0726 0.72 +0.3 827,157 + Shew_0726 0.72 +0.4 827,286 + Shew_0726 0.80 +0.2 827,309 - Shew_0726 0.82 +0.1 827,639 + +1.1 827,684 - -0.3 828,259 - Shew_0727 0.50 -0.2 828,418 - Shew_0727 0.61 -0.5 828,679 + Shew_0727 0.80 -0.2 828,805 + Shew_0727 0.90 -0.8 829,397 - Shew_0728 0.36 -2.8 829,426 - Shew_0728 0.39 -3.7 829,457 - Shew_0728 0.42 -4.8 829,635 - Shew_0728 0.59 -2.9 829,761 - Shew_0728 0.72 -2.7 829,880 + Shew_0728 0.83 -2.6
Or see this region's nucleotide sequence