Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0690 and Shew_0691 are separated by 189 nucleotides Shew_0691 and Shew_0692 are separated by 4 nucleotides
Shew_0690: Shew_0690 - endonuclease/exonuclease/phosphatase (RefSeq), at 783,798 to 784,871
_0690
Shew_0691: Shew_0691 - hypothetical protein (RefSeq), at 785,061 to 786,194
_0691
Shew_0692: Shew_0692 - hypothetical protein (RefSeq), at 786,199 to 787,119
_0692
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 784.095 kb on + strand, within Shew_0690 at 784.137 kb on - strand, within Shew_0690 at 784.605 kb on - strand, within Shew_0690 at 784.683 kb on - strand, within Shew_0690 at 784.830 kb on + strand at 784.838 kb on - strand at 785.041 kb on - strand at 785.305 kb on - strand, within Shew_0691 at 785.305 kb on - strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.376 kb on - strand, within Shew_0691 at 785.468 kb on - strand, within Shew_0691 at 785.558 kb on - strand, within Shew_0691 at 785.620 kb on + strand, within Shew_0691 at 785.620 kb on + strand, within Shew_0691 at 785.692 kb on - strand, within Shew_0691 at 785.977 kb on - strand, within Shew_0691 at 786.073 kb on + strand, within Shew_0691 at 786.091 kb on + strand at 786.504 kb on - strand, within Shew_0692 at 786.596 kb on - strand, within Shew_0692 at 786.755 kb on + strand, within Shew_0692 at 786.897 kb on + strand, within Shew_0692 at 787.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 784,095 + Shew_0690 0.28 -0.5 784,137 - Shew_0690 0.32 +0.4 784,605 - Shew_0690 0.75 -0.0 784,683 - Shew_0690 0.82 -0.1 784,830 + -0.4 784,838 - -0.1 785,041 - -0.3 785,305 - Shew_0691 0.22 +0.2 785,305 - Shew_0691 0.22 +0.4 785,368 + Shew_0691 0.27 +4.9 785,368 + Shew_0691 0.27 -0.6 785,368 + Shew_0691 0.27 +0.5 785,376 - Shew_0691 0.28 -1.2 785,468 - Shew_0691 0.36 +0.2 785,558 - Shew_0691 0.44 -0.0 785,620 + Shew_0691 0.49 +0.2 785,620 + Shew_0691 0.49 +1.2 785,692 - Shew_0691 0.56 +0.6 785,977 - Shew_0691 0.81 -0.1 786,073 + Shew_0691 0.89 +0.0 786,091 + -0.1 786,504 - Shew_0692 0.33 -2.3 786,596 - Shew_0692 0.43 -0.0 786,755 + Shew_0692 0.60 -0.6 786,897 + Shew_0692 0.76 -0.9 787,174 + -0.7
Or see this region's nucleotide sequence