Strain Fitness in Shewanella loihica PV-4 around Shew_0598

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0597 and Shew_0598 are separated by 225 nucleotidesShew_0598 and Shew_0599 are separated by 544 nucleotides Shew_0597: Shew_0597 - major facilitator transporter (RefSeq), at 674,928 to 676,355 _0597 Shew_0598: Shew_0598 - ATP-dependent RNA helicase DbpA (RefSeq), at 676,581 to 677,987 _0598 Shew_0599: Shew_0599 - hypothetical protein (RefSeq), at 678,532 to 679,308 _0599 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1at 675.656 kb on + strand, within Shew_0597at 675.656 kb on + strand, within Shew_0597at 675.664 kb on - strand, within Shew_0597at 675.664 kb on - strand, within Shew_0597at 675.664 kb on - strand, within Shew_0597at 675.731 kb on + strand, within Shew_0597at 675.733 kb on - strand, within Shew_0597at 675.786 kb on - strand, within Shew_0597at 675.803 kb on + strand, within Shew_0597at 675.971 kb on + strand, within Shew_0597at 676.171 kb on + strand, within Shew_0597at 676.229 kb on - strandat 676.240 kb on + strandat 676.851 kb on - strand, within Shew_0598at 676.904 kb on - strand, within Shew_0598at 676.912 kb on + strand, within Shew_0598at 676.912 kb on + strand, within Shew_0598at 676.920 kb on - strand, within Shew_0598at 676.922 kb on + strand, within Shew_0598at 676.922 kb on + strand, within Shew_0598at 676.930 kb on - strand, within Shew_0598at 676.930 kb on - strand, within Shew_0598at 677.144 kb on - strand, within Shew_0598at 677.174 kb on + strand, within Shew_0598at 677.485 kb on + strand, within Shew_0598at 677.758 kb on - strand, within Shew_0598at 677.847 kb on - strandat 677.895 kb on - strandat 677.942 kb on + strandat 677.948 kb on + strandat 677.954 kb on + strandat 677.956 kb on - strandat 677.956 kb on - strandat 677.956 kb on - strandat 677.956 kb on - strandat 678.027 kb on + strandat 678.107 kb on + strandat 678.188 kb on - strandat 678.206 kb on - strandat 678.276 kb on - strandat 678.282 kb on + strandat 678.282 kb on + strandat 678.316 kb on + strandat 678.316 kb on + strandat 678.371 kb on + strandat 678.379 kb on - strandat 678.379 kb on - strandat 678.486 kb on + strandat 678.487 kb on + strandat 678.487 kb on + strandat 678.521 kb on - strandat 678.524 kb on + strandat 678.532 kb on - strandat 678.532 kb on - strandat 678.604 kb on + strandat 678.606 kb on + strandat 678.624 kb on - strand, within Shew_0599at 678.642 kb on - strand, within Shew_0599at 678.649 kb on + strand, within Shew_0599at 678.662 kb on + strand, within Shew_0599at 678.706 kb on + strand, within Shew_0599at 678.728 kb on + strand, within Shew_0599at 678.728 kb on + strand, within Shew_0599at 678.736 kb on - strand, within Shew_0599at 678.760 kb on - strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.884 kb on + strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.892 kb on - strand, within Shew_0599at 678.895 kb on - strand, within Shew_0599at 678.897 kb on + strand, within Shew_0599at 678.897 kb on + strand, within Shew_0599at 678.897 kb on + strand, within Shew_0599at 678.897 kb on + strand, within Shew_0599at 678.903 kb on - strand, within Shew_0599at 678.903 kb on - strand, within Shew_0599at 678.905 kb on - strand, within Shew_0599at 678.905 kb on - strand, within Shew_0599at 678.906 kb on + strand, within Shew_0599at 678.914 kb on - strand, within Shew_0599at 678.915 kb on - strand, within Shew_0599at 678.954 kb on + strand, within Shew_0599at 678.968 kb on - strand, within Shew_0599at 678.968 kb on - strand, within Shew_0599at 678.975 kb on - strand, within Shew_0599

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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675,656 + Shew_0597 0.51 +0.7
675,656 + Shew_0597 0.51 +0.8
675,664 - Shew_0597 0.52 +0.3
675,664 - Shew_0597 0.52 +0.2
675,664 - Shew_0597 0.52 -0.1
675,731 + Shew_0597 0.56 +0.6
675,733 - Shew_0597 0.56 -0.5
675,786 - Shew_0597 0.60 -0.2
675,803 + Shew_0597 0.61 +0.3
675,971 + Shew_0597 0.73 +1.0
676,171 + Shew_0597 0.87 +0.7
676,229 - +0.2
676,240 + -1.0
676,851 - Shew_0598 0.19 -0.4
676,904 - Shew_0598 0.23 -0.2
676,912 + Shew_0598 0.24 -0.1
676,912 + Shew_0598 0.24 -0.5
676,920 - Shew_0598 0.24 -0.3
676,922 + Shew_0598 0.24 +0.0
676,922 + Shew_0598 0.24 -1.1
676,930 - Shew_0598 0.25 -0.2
676,930 - Shew_0598 0.25 -0.2
677,144 - Shew_0598 0.40 -0.8
677,174 + Shew_0598 0.42 +0.0
677,485 + Shew_0598 0.64 -0.8
677,758 - Shew_0598 0.84 -0.3
677,847 - +0.9
677,895 - -0.1
677,942 + -0.4
677,948 + -0.7
677,954 + -0.3
677,956 - +0.4
677,956 - +0.3
677,956 - +0.0
677,956 - +1.2
678,027 + -0.4
678,107 + -0.3
678,188 - +0.0
678,206 - +0.1
678,276 - +0.4
678,282 + -1.3
678,282 + -0.2
678,316 + +0.3
678,316 + -0.3
678,371 + -0.2
678,379 - -0.1
678,379 - +0.1
678,486 + -0.4
678,487 + +1.7
678,487 + -2.3
678,521 - -0.0
678,524 + -0.2
678,532 - -1.7
678,532 - -0.3
678,604 + -0.6
678,606 + +0.5
678,624 - Shew_0599 0.12 +1.4
678,642 - Shew_0599 0.14 +0.1
678,649 + Shew_0599 0.15 +0.3
678,662 + Shew_0599 0.17 -1.0
678,706 + Shew_0599 0.22 -0.3
678,728 + Shew_0599 0.25 +0.4
678,728 + Shew_0599 0.25 +0.3
678,736 - Shew_0599 0.26 +0.9
678,760 - Shew_0599 0.29 -0.2
678,884 + Shew_0599 0.45 -0.6
678,884 + Shew_0599 0.45 -0.3
678,884 + Shew_0599 0.45 -1.3
678,884 + Shew_0599 0.45 -0.2
678,884 + Shew_0599 0.45 -0.0
678,884 + Shew_0599 0.45 +0.3
678,884 + Shew_0599 0.45 -0.4
678,884 + Shew_0599 0.45 -0.6
678,884 + Shew_0599 0.45 +0.1
678,884 + Shew_0599 0.45 +1.0
678,884 + Shew_0599 0.45 -0.3
678,884 + Shew_0599 0.45 -0.7
678,892 - Shew_0599 0.46 +0.1
678,892 - Shew_0599 0.46 +0.2
678,892 - Shew_0599 0.46 +0.0
678,892 - Shew_0599 0.46 +0.5
678,892 - Shew_0599 0.46 -0.1
678,892 - Shew_0599 0.46 +0.2
678,892 - Shew_0599 0.46 -0.4
678,892 - Shew_0599 0.46 -1.0
678,892 - Shew_0599 0.46 +0.9
678,892 - Shew_0599 0.46 -1.1
678,892 - Shew_0599 0.46 -0.3
678,895 - Shew_0599 0.47 +0.4
678,897 + Shew_0599 0.47 -0.5
678,897 + Shew_0599 0.47 +0.2
678,897 + Shew_0599 0.47 +0.4
678,897 + Shew_0599 0.47 +0.1
678,903 - Shew_0599 0.48 -0.2
678,903 - Shew_0599 0.48 +0.0
678,905 - Shew_0599 0.48 -0.2
678,905 - Shew_0599 0.48 -0.3
678,906 + Shew_0599 0.48 +0.3
678,914 - Shew_0599 0.49 +0.0
678,915 - Shew_0599 0.49 -1.9
678,954 + Shew_0599 0.54 -0.3
678,968 - Shew_0599 0.56 +0.1
678,968 - Shew_0599 0.56 +0.1
678,975 - Shew_0599 0.57 +0.2

Or see this region's nucleotide sequence