Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0593 and Shew_0594 are separated by 174 nucleotides Shew_0594 and Shew_0595 are separated by 65 nucleotides Shew_0595 and Shew_0596 are separated by 100 nucleotides Shew_0596 and Shew_0597 are separated by 256 nucleotides
Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896
_0593
Shew_0594: Shew_0594 - hypothetical protein (RefSeq), at 672,071 to 672,271
_0594
Shew_0595: Shew_0595 - hypothetical protein (RefSeq), at 672,337 to 672,648
_0595
Shew_0596: Shew_0596 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 672,749 to 674,671
_0596
Shew_0597: Shew_0597 - major facilitator transporter (RefSeq), at 674,928 to 676,355
_0597
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -1
0
1 at 671.954 kb on + strand at 672.136 kb on + strand, within Shew_0594 at 672.136 kb on + strand, within Shew_0594 at 672.219 kb on - strand, within Shew_0594 at 672.267 kb on - strand at 672.516 kb on + strand, within Shew_0595 at 672.982 kb on - strand, within Shew_0596 at 673.357 kb on - strand, within Shew_0596 at 673.435 kb on + strand, within Shew_0596 at 673.548 kb on + strand, within Shew_0596 at 673.588 kb on - strand, within Shew_0596 at 674.014 kb on + strand, within Shew_0596 at 674.022 kb on - strand, within Shew_0596 at 674.131 kb on + strand, within Shew_0596 at 674.169 kb on - strand, within Shew_0596 at 674.265 kb on + strand, within Shew_0596 at 674.289 kb on + strand, within Shew_0596 at 674.420 kb on + strand, within Shew_0596 at 674.624 kb on + strand at 674.632 kb on - strand at 674.680 kb on + strand at 674.680 kb on + strand at 674.688 kb on - strand at 674.688 kb on - strand at 674.688 kb on - strand at 674.705 kb on - strand at 675.175 kb on + strand, within Shew_0597 at 675.213 kb on - strand, within Shew_0597 at 675.215 kb on + strand, within Shew_0597 at 675.219 kb on + strand, within Shew_0597 at 675.297 kb on + strand, within Shew_0597 at 675.307 kb on + strand, within Shew_0597 at 675.307 kb on + strand, within Shew_0597 at 675.315 kb on - strand, within Shew_0597 at 675.315 kb on - strand, within Shew_0597 at 675.315 kb on - strand, within Shew_0597 at 675.656 kb on + strand, within Shew_0597 at 675.656 kb on + strand, within Shew_0597 at 675.664 kb on - strand, within Shew_0597 at 675.664 kb on - strand, within Shew_0597 at 675.664 kb on - strand, within Shew_0597
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 671,954 + +0.2 672,136 + Shew_0594 0.32 -0.6 672,136 + Shew_0594 0.32 +0.5 672,219 - Shew_0594 0.74 +0.5 672,267 - +0.6 672,516 + Shew_0595 0.57 +0.8 672,982 - Shew_0596 0.12 -0.5 673,357 - Shew_0596 0.32 -1.7 673,435 + Shew_0596 0.36 +0.0 673,548 + Shew_0596 0.42 -0.5 673,588 - Shew_0596 0.44 -0.3 674,014 + Shew_0596 0.66 -0.6 674,022 - Shew_0596 0.66 -0.1 674,131 + Shew_0596 0.72 -1.4 674,169 - Shew_0596 0.74 -0.3 674,265 + Shew_0596 0.79 -0.3 674,289 + Shew_0596 0.80 -0.3 674,420 + Shew_0596 0.87 -0.1 674,624 + +0.8 674,632 - +0.4 674,680 + +0.3 674,680 + +0.2 674,688 - +0.6 674,688 - +0.8 674,688 - +0.0 674,705 - +0.2 675,175 + Shew_0597 0.17 +0.5 675,213 - Shew_0597 0.20 +0.9 675,215 + Shew_0597 0.20 -0.4 675,219 + Shew_0597 0.20 -0.4 675,297 + Shew_0597 0.26 -0.1 675,307 + Shew_0597 0.27 +0.2 675,307 + Shew_0597 0.27 -0.3 675,315 - Shew_0597 0.27 -0.2 675,315 - Shew_0597 0.27 +0.1 675,315 - Shew_0597 0.27 +0.5 675,656 + Shew_0597 0.51 +0.7 675,656 + Shew_0597 0.51 +0.8 675,664 - Shew_0597 0.52 +0.3 675,664 - Shew_0597 0.52 +0.2 675,664 - Shew_0597 0.52 -0.1
Or see this region's nucleotide sequence