Strain Fitness in Shewanella loihica PV-4 around Shew_0521

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
589,444	-		Shew_0520	0.23	+0.2
589,609	-		Shew_0520	0.37	+0.2
589,711	-		Shew_0520	0.46	-0.5
589,794	-		Shew_0520	0.53	-1.3
589,858	+		Shew_0520	0.58	-0.5
589,866	-		Shew_0520	0.59	-0.1
591,446	-	metL	Shew_0521	0.45	-0.4
591,553	+	metL	Shew_0521	0.50	+0.2
592,082	-	metL	Shew_0521	0.72	+0.7
592,169	+	metL	Shew_0521	0.75	+0.1
592,169	+	metL	Shew_0521	0.75	+0.6
592,177	-	metL	Shew_0521	0.76	+2.2
592,204	-	metL	Shew_0521	0.77	-0.1
592,540	-				+1.7
592,548	+				+2.0
593,299	-	metF	Shew_0522	0.31	+0.0
593,392	+	metF	Shew_0522	0.42	-0.7
593,392	+	metF	Shew_0522	0.42	-0.3
593,392	+	metF	Shew_0522	0.42	+0.2
593,392	+	metF	Shew_0522	0.42	+0.9
593,392	+	metF	Shew_0522	0.42	-0.1
593,392	+	metF	Shew_0522	0.42	-0.4
593,392	+	metF	Shew_0522	0.42	+0.4
593,400	-	metF	Shew_0522	0.43	-0.3
593,400	-	metF	Shew_0522	0.43	-2.6
593,400	-	metF	Shew_0522	0.43	-0.2
593,400	-	metF	Shew_0522	0.43	-3.3
593,446	-	metF	Shew_0522	0.48	-0.3
593,746	+	metF	Shew_0522	0.82	+1.0