Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0514 and Shew_0515 are separated by 44 nucleotides Shew_0515 and Shew_0516 are separated by 64 nucleotides Shew_0516 and Shew_0517 are separated by 512 nucleotides
Shew_0514: Shew_0514 - cytochrome c, putative (RefSeq), at 582,488 to 583,894
_0514
Shew_0515: Shew_0515 - hypothetical protein (RefSeq), at 583,939 to 585,651
_0515
Shew_0516: Shew_0516 - cytochrome c family protein (RefSeq), at 585,716 to 586,045
_0516
Shew_0517: Shew_0517 - putative plasmid transfer protein (RefSeq), at 586,558 to 587,754
_0517
Position (kb) 583
584
585
586 Strain fitness (log2 ratio) -1
0
1 at 583.255 kb on + strand, within Shew_0514 at 583.301 kb on + strand, within Shew_0514 at 583.582 kb on - strand, within Shew_0514 at 583.708 kb on - strand, within Shew_0514 at 583.776 kb on - strand at 583.788 kb on - strand at 584.044 kb on + strand at 584.051 kb on + strand at 584.779 kb on + strand, within Shew_0515 at 584.835 kb on + strand, within Shew_0515 at 585.062 kb on - strand, within Shew_0515 at 585.095 kb on + strand, within Shew_0515 at 585.095 kb on + strand, within Shew_0515 at 585.095 kb on + strand, within Shew_0515 at 585.603 kb on - strand at 585.951 kb on + strand, within Shew_0516 at 585.951 kb on + strand, within Shew_0516 at 585.975 kb on + strand, within Shew_0516 at 586.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 583,255 + Shew_0514 0.55 +0.5 583,301 + Shew_0514 0.58 -0.3 583,582 - Shew_0514 0.78 -0.3 583,708 - Shew_0514 0.87 -0.5 583,776 - +0.6 583,788 - +0.4 584,044 + -0.8 584,051 + +0.1 584,779 + Shew_0515 0.49 +0.9 584,835 + Shew_0515 0.52 +0.1 585,062 - Shew_0515 0.66 +0.3 585,095 + Shew_0515 0.67 -0.5 585,095 + Shew_0515 0.67 +0.8 585,095 + Shew_0515 0.67 +0.0 585,603 - -0.1 585,951 + Shew_0516 0.71 +0.4 585,951 + Shew_0516 0.71 -0.5 585,975 + Shew_0516 0.78 +0.8 586,367 + +0.3
Or see this region's nucleotide sequence