Strain Fitness in Shewanella loihica PV-4 around Shew_0485

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0484 and Shew_0485 are separated by 36 nucleotidesShew_0485 and Shew_0486 are separated by 92 nucleotides Shew_0484: Shew_0484 - hypothetical protein (RefSeq), at 541,500 to 542,771 _0484 Shew_0485: Shew_0485 - cold-shock DNA-binding domain-containing protein (RefSeq), at 542,808 to 543,425 _0485 Shew_0486: Shew_0486 - permease (RefSeq), at 543,518 to 544,534 _0486 Position (kb) 542 543 544Strain fitness (log2 ratio) -1 0 1at 541.912 kb on - strand, within Shew_0484at 542.109 kb on - strand, within Shew_0484at 542.441 kb on + strand, within Shew_0484at 542.637 kb on + strand, within Shew_0484at 542.639 kb on - strand, within Shew_0484at 542.669 kb on - strandat 542.851 kb on - strandat 543.095 kb on + strand, within Shew_0485at 543.559 kb on + strandat 543.567 kb on - strandat 543.679 kb on - strand, within Shew_0486at 543.679 kb on - strand, within Shew_0486at 543.778 kb on + strand, within Shew_0486at 544.116 kb on + strand, within Shew_0486at 544.116 kb on + strand, within Shew_0486at 544.250 kb on + strand, within Shew_0486at 544.321 kb on + strand, within Shew_0486at 544.321 kb on + strand, within Shew_0486at 544.402 kb on + strand, within Shew_0486at 544.412 kb on + strand, within Shew_0486

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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541,912 - Shew_0484 0.32 +1.2
542,109 - Shew_0484 0.48 +0.2
542,441 + Shew_0484 0.74 -0.7
542,637 + Shew_0484 0.89 -0.1
542,639 - Shew_0484 0.90 -0.1
542,669 - +0.1
542,851 - -0.6
543,095 + Shew_0485 0.46 -0.9
543,559 + +0.1
543,567 - -0.1
543,679 - Shew_0486 0.16 +0.0
543,679 - Shew_0486 0.16 +0.3
543,778 + Shew_0486 0.26 -0.3
544,116 + Shew_0486 0.59 -0.3
544,116 + Shew_0486 0.59 -0.2
544,250 + Shew_0486 0.72 +0.0
544,321 + Shew_0486 0.79 -0.2
544,321 + Shew_0486 0.79 -0.5
544,402 + Shew_0486 0.87 -0.4
544,412 + Shew_0486 0.88 +0.5

Or see this region's nucleotide sequence