Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0434 and Shew_0435 are separated by 247 nucleotides Shew_0435 and Shew_0436 are separated by 14 nucleotides Shew_0436 and Shew_0437 are separated by 133 nucleotides Shew_0437 and Shew_0438 are separated by 48 nucleotides
Shew_0434: Shew_0434 - hypothetical protein (RefSeq), at 485,176 to 485,487
_0434
Shew_0435: Shew_0435 - hypothetical protein (RefSeq), at 485,735 to 486,256
_0435
Shew_0436: Shew_0436 - diguanylate cyclase/phosphodiesterase (RefSeq), at 486,271 to 488,043
_0436
Shew_0437: Shew_0437 - hypothetical protein (RefSeq), at 488,177 to 488,488
_0437
Shew_0438: Shew_0438 - GumN family protein (RefSeq), at 488,537 to 489,421
_0438
Position (kb) 486
487
488
489 Strain fitness (log2 ratio) -1
0
1 at 485.365 kb on + strand, within Shew_0434 at 485.406 kb on + strand, within Shew_0434 at 485.698 kb on - strand at 486.035 kb on - strand, within Shew_0435 at 486.333 kb on + strand at 486.443 kb on - strand at 486.482 kb on - strand, within Shew_0436 at 486.554 kb on - strand, within Shew_0436 at 486.709 kb on + strand, within Shew_0436 at 486.875 kb on - strand, within Shew_0436 at 486.905 kb on + strand, within Shew_0436 at 486.905 kb on + strand, within Shew_0436 at 487.012 kb on + strand, within Shew_0436 at 487.218 kb on + strand, within Shew_0436 at 487.419 kb on + strand, within Shew_0436 at 487.426 kb on + strand, within Shew_0436 at 487.427 kb on - strand, within Shew_0436 at 487.897 kb on - strand at 487.929 kb on - strand at 488.023 kb on + strand at 488.086 kb on + strand at 488.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 485,365 + Shew_0434 0.61 -0.9 485,406 + Shew_0434 0.74 +0.1 485,698 - +0.3 486,035 - Shew_0435 0.57 -1.3 486,333 + +0.3 486,443 - -0.2 486,482 - Shew_0436 0.12 -0.1 486,554 - Shew_0436 0.16 -0.6 486,709 + Shew_0436 0.25 +0.1 486,875 - Shew_0436 0.34 -0.2 486,905 + Shew_0436 0.36 -0.2 486,905 + Shew_0436 0.36 -0.8 487,012 + Shew_0436 0.42 -0.5 487,218 + Shew_0436 0.53 -0.4 487,419 + Shew_0436 0.65 +0.4 487,426 + Shew_0436 0.65 -0.4 487,427 - Shew_0436 0.65 -0.1 487,897 - -0.5 487,929 - -0.4 488,023 + +0.0 488,086 + -0.0 488,094 - -1.1
Or see this region's nucleotide sequence