Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0351 and Shew_0352 are separated by 117 nucleotides Shew_0352 and Shew_0353 are separated by 2 nucleotides Shew_0353 and Shew_0354 are separated by 54 nucleotides Shew_0354 and Shew_0355 are separated by 10 nucleotides
Shew_0351: Shew_0351 - TPR repeat-containing protein (RefSeq), at 400,254 to 400,946
_0351
Shew_0352: Shew_0352 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 401,064 to 401,711
_0352
Shew_0353: Shew_0353 - polysulphide reductase, NrfD (RefSeq), at 401,714 to 402,661
_0353
Shew_0354: Shew_0354 - NosL family protein (RefSeq), at 402,716 to 403,204
_0354
Shew_0355: Shew_0355 - periplasmic copper-binding (RefSeq), at 403,215 to 404,573
_0355
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1 at 400.855 kb on - strand, within Shew_0351 at 400.900 kb on + strand at 400.903 kb on - strand at 400.905 kb on + strand at 400.941 kb on + strand at 401.073 kb on + strand at 401.133 kb on - strand, within Shew_0352 at 401.237 kb on - strand, within Shew_0352 at 401.538 kb on - strand, within Shew_0352 at 401.550 kb on + strand, within Shew_0352 at 401.653 kb on - strand at 401.686 kb on - strand at 401.880 kb on - strand, within Shew_0353 at 401.943 kb on - strand, within Shew_0353 at 402.129 kb on - strand, within Shew_0353 at 402.129 kb on - strand, within Shew_0353 at 402.632 kb on - strand at 402.641 kb on + strand at 402.702 kb on + strand at 402.780 kb on + strand, within Shew_0354 at 403.124 kb on + strand, within Shew_0354 at 403.130 kb on - strand, within Shew_0354 at 403.149 kb on - strand, within Shew_0354 at 403.173 kb on + strand at 403.187 kb on - strand at 403.288 kb on + strand at 403.432 kb on - strand, within Shew_0355 at 403.456 kb on + strand, within Shew_0355
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 400,855 - Shew_0351 0.87 -0.1 400,900 + +0.8 400,903 - -1.0 400,905 + +1.0 400,941 + -0.1 401,073 + -2.3 401,133 - Shew_0352 0.11 -0.7 401,237 - Shew_0352 0.27 -0.2 401,538 - Shew_0352 0.73 -0.4 401,550 + Shew_0352 0.75 +0.6 401,653 - -0.1 401,686 - -0.2 401,880 - Shew_0353 0.18 -0.0 401,943 - Shew_0353 0.24 +0.9 402,129 - Shew_0353 0.44 -0.2 402,129 - Shew_0353 0.44 +0.8 402,632 - -0.1 402,641 + -0.3 402,702 + -0.1 402,780 + Shew_0354 0.13 -0.1 403,124 + Shew_0354 0.83 +0.2 403,130 - Shew_0354 0.85 -0.1 403,149 - Shew_0354 0.89 -0.3 403,173 + +0.8 403,187 - -0.5 403,288 + -0.3 403,432 - Shew_0355 0.16 -1.3 403,456 + Shew_0355 0.18 +0.4
Or see this region's nucleotide sequence