Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0341 and Shew_0342 are separated by 50 nucleotides Shew_0342 and Shew_0343 are separated by 229 nucleotides Shew_0343 and Shew_0344 are separated by 417 nucleotides
Shew_0341: Shew_0341 - TonB-dependent receptor (RefSeq), at 387,111 to 389,840
_0341
Shew_0342: Shew_0342 - hypothetical protein (RefSeq), at 389,891 to 390,427
_0342
Shew_0343: Shew_0343 - hypothetical protein (RefSeq), at 390,657 to 391,235
_0343
Shew_0344: Shew_0344 - Na+/H+ antiporter NhaC (RefSeq), at 391,653 to 393,173
_0344
Position (kb) 390
391
392 Strain fitness (log2 ratio) -1
0
1
2 at 389.697 kb on - strand at 389.815 kb on - strand at 390.008 kb on - strand, within Shew_0342 at 390.049 kb on + strand, within Shew_0342 at 390.088 kb on + strand, within Shew_0342 at 390.294 kb on - strand, within Shew_0342 at 390.307 kb on + strand, within Shew_0342 at 390.388 kb on + strand at 390.396 kb on - strand at 390.564 kb on - strand at 390.634 kb on - strand at 390.711 kb on - strand at 391.047 kb on - strand, within Shew_0343 at 391.066 kb on + strand, within Shew_0343 at 392.110 kb on - strand, within Shew_0344
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 389,697 - -0.5 389,815 - +0.2 390,008 - Shew_0342 0.22 +1.4 390,049 + Shew_0342 0.29 +2.1 390,088 + Shew_0342 0.37 +0.9 390,294 - Shew_0342 0.75 +0.6 390,307 + Shew_0342 0.77 +0.4 390,388 + +1.0 390,396 - +0.4 390,564 - -0.4 390,634 - -0.0 390,711 - +0.1 391,047 - Shew_0343 0.67 -0.3 391,066 + Shew_0343 0.71 -1.5 392,110 - Shew_0344 0.30 +0.0
Or see this region's nucleotide sequence