Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0334 and sdhB overlap by 4 nucleotides sdhB and Shew_0336 are separated by 191 nucleotides
Shew_0334: Shew_0334 - fumarate reductase flavoprotein subunit (RefSeq), at 378,664 to 380,670
_0334
Shew_0335: sdhB - fumarate reductase iron-sulfur subunit (RefSeq), at 380,667 to 381,398
sdhB
Shew_0336: Shew_0336 - LysR family transcriptional regulator (RefSeq), at 381,590 to 382,513
_0336
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 379.670 kb on + strand, within Shew_0334 at 379.679 kb on + strand, within Shew_0334 at 380.125 kb on - strand, within Shew_0334 at 380.125 kb on - strand, within Shew_0334 at 380.125 kb on - strand, within Shew_0334 at 380.157 kb on + strand, within Shew_0334 at 380.163 kb on - strand, within Shew_0334 at 380.252 kb on - strand, within Shew_0334 at 380.363 kb on + strand, within Shew_0334 at 380.367 kb on - strand, within Shew_0334 at 380.371 kb on - strand, within Shew_0334 at 380.371 kb on - strand, within Shew_0334 at 380.567 kb on + strand at 380.607 kb on + strand at 380.678 kb on - strand at 380.915 kb on - strand, within sdhB at 380.999 kb on + strand, within sdhB at 381.010 kb on + strand, within sdhB at 381.155 kb on - strand, within sdhB at 381.750 kb on + strand, within Shew_0336 at 381.758 kb on - strand, within Shew_0336 at 381.758 kb on - strand, within Shew_0336 at 381.758 kb on - strand, within Shew_0336 at 381.760 kb on + strand, within Shew_0336 at 381.870 kb on + strand, within Shew_0336 at 381.908 kb on - strand, within Shew_0336 at 382.034 kb on - strand, within Shew_0336 at 382.106 kb on + strand, within Shew_0336 at 382.217 kb on - strand, within Shew_0336 at 382.221 kb on + strand, within Shew_0336 at 382.221 kb on + strand, within Shew_0336
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 379,670 + Shew_0334 0.50 +0.0 379,679 + Shew_0334 0.51 -0.4 380,125 - Shew_0334 0.73 -0.3 380,125 - Shew_0334 0.73 -0.5 380,125 - Shew_0334 0.73 +0.3 380,157 + Shew_0334 0.74 -0.0 380,163 - Shew_0334 0.75 -0.8 380,252 - Shew_0334 0.79 +0.0 380,363 + Shew_0334 0.85 +0.0 380,367 - Shew_0334 0.85 +0.6 380,371 - Shew_0334 0.85 +0.3 380,371 - Shew_0334 0.85 +0.4 380,567 + +0.5 380,607 + -0.4 380,678 - +0.2 380,915 - sdhB Shew_0335 0.34 -0.3 380,999 + sdhB Shew_0335 0.45 +0.3 381,010 + sdhB Shew_0335 0.47 -1.9 381,155 - sdhB Shew_0335 0.67 -1.2 381,750 + Shew_0336 0.17 -0.2 381,758 - Shew_0336 0.18 -0.1 381,758 - Shew_0336 0.18 -0.6 381,758 - Shew_0336 0.18 +2.6 381,760 + Shew_0336 0.18 -2.1 381,870 + Shew_0336 0.30 +0.2 381,908 - Shew_0336 0.34 -1.2 382,034 - Shew_0336 0.48 +0.7 382,106 + Shew_0336 0.56 +0.6 382,217 - Shew_0336 0.68 +0.3 382,221 + Shew_0336 0.68 +0.3 382,221 + Shew_0336 0.68 +0.4
Or see this region's nucleotide sequence