Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0260 and Shew_0261 are separated by 250 nucleotides Shew_0261 and Shew_0262 are separated by 17 nucleotides Shew_0262 and Shew_0263 are separated by 70 nucleotides Shew_0263 and Shew_0264 overlap by 4 nucleotides
Shew_0260: Shew_0260 - hypothetical protein (RefSeq), at 279,538 to 280,386
_0260
Shew_0261: Shew_0261 - hypothetical protein (RefSeq), at 280,637 to 280,948
_0261
Shew_0262: Shew_0262 - hypothetical protein (RefSeq), at 280,966 to 282,420
_0262
Shew_0263: Shew_0263 - hypothetical protein (RefSeq), at 282,491 to 282,796
_0263
Shew_0264: Shew_0264 - serine/threonine protein kinase (RefSeq), at 282,793 to 283,794
_0264
Position (kb) 280
281
282
283 Strain fitness (log2 ratio) -1
0
1 at 279.972 kb on + strand, within Shew_0260 at 280.112 kb on + strand, within Shew_0260 at 280.308 kb on - strand at 280.380 kb on + strand at 280.388 kb on - strand at 280.743 kb on - strand, within Shew_0261 at 280.950 kb on + strand at 280.958 kb on - strand at 280.964 kb on - strand at 281.023 kb on + strand at 281.092 kb on - strand at 281.163 kb on + strand, within Shew_0262 at 281.243 kb on - strand, within Shew_0262 at 281.416 kb on - strand, within Shew_0262 at 281.534 kb on + strand, within Shew_0262 at 281.537 kb on - strand, within Shew_0262 at 281.552 kb on + strand, within Shew_0262 at 281.560 kb on - strand, within Shew_0262 at 281.613 kb on + strand, within Shew_0262 at 281.923 kb on + strand, within Shew_0262 at 282.023 kb on + strand, within Shew_0262 at 282.296 kb on - strand at 282.601 kb on + strand, within Shew_0263 at 283.020 kb on + strand, within Shew_0264 at 283.087 kb on + strand, within Shew_0264 at 283.157 kb on + strand, within Shew_0264 at 283.157 kb on + strand, within Shew_0264 at 283.165 kb on - strand, within Shew_0264 at 283.347 kb on - strand, within Shew_0264 at 283.356 kb on + strand, within Shew_0264
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 279,972 + Shew_0260 0.51 -0.3 280,112 + Shew_0260 0.68 -0.2 280,308 - +0.2 280,380 + +0.4 280,388 - -0.1 280,743 - Shew_0261 0.34 -0.5 280,950 + -1.2 280,958 - +0.0 280,964 - +0.4 281,023 + +0.4 281,092 - +0.1 281,163 + Shew_0262 0.14 +0.7 281,243 - Shew_0262 0.19 +0.3 281,416 - Shew_0262 0.31 +0.4 281,534 + Shew_0262 0.39 -0.2 281,537 - Shew_0262 0.39 +0.0 281,552 + Shew_0262 0.40 +0.2 281,560 - Shew_0262 0.41 +0.9 281,613 + Shew_0262 0.44 +0.9 281,923 + Shew_0262 0.66 -0.2 282,023 + Shew_0262 0.73 +0.9 282,296 - +0.3 282,601 + Shew_0263 0.36 -0.2 283,020 + Shew_0264 0.23 +0.0 283,087 + Shew_0264 0.29 -0.3 283,157 + Shew_0264 0.36 +0.7 283,157 + Shew_0264 0.36 -0.0 283,165 - Shew_0264 0.37 +0.7 283,347 - Shew_0264 0.55 +0.5 283,356 + Shew_0264 0.56 +0.4
Or see this region's nucleotide sequence