Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0258 and Shew_0259 are separated by 112 nucleotides Shew_0259 and Shew_0260 are separated by 322 nucleotides
Shew_0258: Shew_0258 - hypothetical protein (RefSeq), at 277,754 to 278,701
_0258
Shew_0259: Shew_0259 - hypothetical protein (RefSeq), at 278,814 to 279,215
_0259
Shew_0260: Shew_0260 - hypothetical protein (RefSeq), at 279,538 to 280,386
_0260
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1 at 277.894 kb on + strand, within Shew_0258 at 278.082 kb on - strand, within Shew_0258 at 278.084 kb on + strand, within Shew_0258 at 278.084 kb on + strand, within Shew_0258 at 278.092 kb on - strand, within Shew_0258 at 278.092 kb on - strand, within Shew_0258 at 278.187 kb on + strand, within Shew_0258 at 278.187 kb on + strand, within Shew_0258 at 278.195 kb on - strand, within Shew_0258 at 278.453 kb on - strand, within Shew_0258 at 278.453 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.613 kb on + strand at 278.847 kb on - strand at 278.902 kb on + strand, within Shew_0259 at 279.095 kb on + strand, within Shew_0259 at 279.103 kb on - strand, within Shew_0259 at 279.239 kb on + strand at 279.256 kb on - strand at 279.515 kb on + strand at 279.583 kb on - strand at 279.593 kb on - strand at 279.598 kb on - strand at 279.875 kb on - strand, within Shew_0260 at 279.972 kb on + strand, within Shew_0260 at 280.112 kb on + strand, within Shew_0260
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 277,894 + Shew_0258 0.15 -0.5 278,082 - Shew_0258 0.35 +0.0 278,084 + Shew_0258 0.35 +0.5 278,084 + Shew_0258 0.35 +0.3 278,092 - Shew_0258 0.36 +0.1 278,092 - Shew_0258 0.36 +0.1 278,187 + Shew_0258 0.46 -0.6 278,187 + Shew_0258 0.46 +0.3 278,195 - Shew_0258 0.47 +0.3 278,453 - Shew_0258 0.74 -0.1 278,453 - Shew_0258 0.74 +0.2 278,562 - Shew_0258 0.85 +0.2 278,562 - Shew_0258 0.85 +0.3 278,613 + -0.6 278,847 - -0.0 278,902 + Shew_0259 0.22 -0.3 279,095 + Shew_0259 0.70 -2.4 279,103 - Shew_0259 0.72 +0.4 279,239 + +1.1 279,256 - -0.3 279,515 + -1.1 279,583 - +0.1 279,593 - +1.1 279,598 - +0.2 279,875 - Shew_0260 0.40 -0.7 279,972 + Shew_0260 0.51 -0.3 280,112 + Shew_0260 0.68 -0.2
Or see this region's nucleotide sequence