Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0222 and Shew_0223 are separated by 125 nucleotides Shew_0223 and Shew_0224 are separated by 21 nucleotides Shew_0224 and Shew_0225 overlap by 4 nucleotides
Shew_0222: Shew_0222 - LysR family transcriptional regulator (RefSeq), at 236,089 to 236,964
_0222
Shew_0223: Shew_0223 - hypothetical protein (RefSeq), at 237,090 to 237,959
_0223
Shew_0224: Shew_0224 - transport-associated (RefSeq), at 237,981 to 238,550
_0224
Shew_0225: Shew_0225 - phosphoheptose isomerase (RefSeq), at 238,547 to 239,140
_0225
Position (kb) 237
238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 236.123 kb on + strand at 236.251 kb on + strand, within Shew_0222 at 236.360 kb on - strand, within Shew_0222 at 236.399 kb on - strand, within Shew_0222 at 236.673 kb on - strand, within Shew_0222 at 236.818 kb on - strand, within Shew_0222 at 236.836 kb on - strand, within Shew_0222 at 237.118 kb on + strand at 237.322 kb on + strand, within Shew_0223 at 237.388 kb on - strand, within Shew_0223 at 237.693 kb on + strand, within Shew_0223 at 237.693 kb on + strand, within Shew_0223 at 237.705 kb on + strand, within Shew_0223 at 237.711 kb on - strand, within Shew_0223 at 237.768 kb on + strand, within Shew_0223 at 238.094 kb on - strand, within Shew_0224 at 238.167 kb on - strand, within Shew_0224 at 238.292 kb on + strand, within Shew_0224 at 238.300 kb on - strand, within Shew_0224
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 236,123 + -0.1 236,251 + Shew_0222 0.18 -0.5 236,360 - Shew_0222 0.31 -3.9 236,399 - Shew_0222 0.35 -0.4 236,673 - Shew_0222 0.67 +0.1 236,818 - Shew_0222 0.83 +0.3 236,836 - Shew_0222 0.85 -0.3 237,118 + -0.0 237,322 + Shew_0223 0.27 +0.3 237,388 - Shew_0223 0.34 -1.2 237,693 + Shew_0223 0.69 -1.1 237,693 + Shew_0223 0.69 +0.2 237,705 + Shew_0223 0.71 -0.3 237,711 - Shew_0223 0.71 -1.4 237,768 + Shew_0223 0.78 -0.0 238,094 - Shew_0224 0.20 -0.1 238,167 - Shew_0224 0.33 -3.2 238,292 + Shew_0224 0.55 +0.0 238,300 - Shew_0224 0.56 +0.1
Or see this region's nucleotide sequence