Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0119 and Shew_0120 are separated by 172 nucleotides Shew_0120 and Shew_0121 are separated by 40 nucleotides Shew_0121 and Shew_0122 are separated by 15 nucleotides Shew_0122 and Shew_0123 overlap by 4 nucleotides
Shew_0119: Shew_0119 - hypothetical protein (RefSeq), at 130,278 to 130,829
_0119
Shew_0120: Shew_0120 - hypothetical protein (RefSeq), at 131,002 to 131,757
_0120
Shew_0121: Shew_0121 - hypothetical protein (RefSeq), at 131,798 to 131,974
_0121
Shew_0122: Shew_0122 - cytochrome c oxidase, subunit III (RefSeq), at 131,990 to 132,865
_0122
Shew_0123: Shew_0123 - cytochrome C oxidase assembly protein (RefSeq), at 132,862 to 133,431
_0123
Position (kb) 131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 131.161 kb on + strand, within Shew_0120 at 131.258 kb on - strand, within Shew_0120 at 131.404 kb on - strand, within Shew_0120 at 131.452 kb on - strand, within Shew_0120 at 131.803 kb on - strand at 131.898 kb on + strand, within Shew_0121 at 131.949 kb on - strand, within Shew_0121 at 132.204 kb on + strand, within Shew_0122 at 132.244 kb on - strand, within Shew_0122 at 132.280 kb on + strand, within Shew_0122 at 132.343 kb on - strand, within Shew_0122 at 132.397 kb on + strand, within Shew_0122 at 132.410 kb on - strand, within Shew_0122 at 132.414 kb on + strand, within Shew_0122 at 132.422 kb on - strand, within Shew_0122 at 132.489 kb on - strand, within Shew_0122 at 132.521 kb on + strand, within Shew_0122 at 132.521 kb on + strand, within Shew_0122 at 132.545 kb on + strand, within Shew_0122 at 132.639 kb on - strand, within Shew_0122 at 132.669 kb on + strand, within Shew_0122 at 132.680 kb on + strand, within Shew_0122 at 132.737 kb on + strand, within Shew_0122 at 132.815 kb on - strand at 132.845 kb on - strand at 132.929 kb on - strand, within Shew_0123 at 132.949 kb on - strand, within Shew_0123
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 131,161 + Shew_0120 0.21 -0.5 131,258 - Shew_0120 0.34 +0.2 131,404 - Shew_0120 0.53 +0.3 131,452 - Shew_0120 0.60 -0.1 131,803 - -0.2 131,898 + Shew_0121 0.56 -0.8 131,949 - Shew_0121 0.85 -2.5 132,204 + Shew_0122 0.24 +1.3 132,244 - Shew_0122 0.29 -0.8 132,280 + Shew_0122 0.33 -0.6 132,343 - Shew_0122 0.40 -0.2 132,397 + Shew_0122 0.46 -0.2 132,410 - Shew_0122 0.48 -0.1 132,414 + Shew_0122 0.48 -1.0 132,422 - Shew_0122 0.49 -0.0 132,489 - Shew_0122 0.57 -1.6 132,521 + Shew_0122 0.61 -2.1 132,521 + Shew_0122 0.61 +0.6 132,545 + Shew_0122 0.63 -2.8 132,639 - Shew_0122 0.74 -0.0 132,669 + Shew_0122 0.78 -0.1 132,680 + Shew_0122 0.79 +1.1 132,737 + Shew_0122 0.85 +0.3 132,815 - -0.3 132,845 - +0.0 132,929 - Shew_0123 0.12 +0.3 132,949 - Shew_0123 0.15 +0.1
Or see this region's nucleotide sequence