Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0117 and Shew_0118 are separated by 12 nucleotides Shew_0118 and Shew_0119 overlap by 1 nucleotides Shew_0119 and Shew_0120 are separated by 172 nucleotides Shew_0120 and Shew_0121 are separated by 40 nucleotides
Shew_0117: Shew_0117 - protoheme IX farnesyltransferase (RefSeq), at 128,380 to 129,282
_0117
Shew_0118: Shew_0118 - cytochrome oxidase assembly (RefSeq), at 129,295 to 130,278
_0118
Shew_0119: Shew_0119 - hypothetical protein (RefSeq), at 130,278 to 130,829
_0119
Shew_0120: Shew_0120 - hypothetical protein (RefSeq), at 131,002 to 131,757
_0120
Shew_0121: Shew_0121 - hypothetical protein (RefSeq), at 131,798 to 131,974
_0121
Position (kb) 130
131 Strain fitness (log2 ratio) -2
-1
0
1 at 129.312 kb on + strand at 129.335 kb on - strand at 129.392 kb on - strand at 129.506 kb on + strand, within Shew_0118 at 129.514 kb on - strand, within Shew_0118 at 129.514 kb on - strand, within Shew_0118 at 129.514 kb on - strand, within Shew_0118 at 129.611 kb on + strand, within Shew_0118 at 129.681 kb on + strand, within Shew_0118 at 129.797 kb on - strand, within Shew_0118 at 129.993 kb on + strand, within Shew_0118 at 130.029 kb on + strand, within Shew_0118 at 130.201 kb on - strand at 130.244 kb on - strand at 130.246 kb on - strand at 130.256 kb on - strand at 130.293 kb on - strand at 130.485 kb on - strand, within Shew_0119 at 130.509 kb on - strand, within Shew_0119 at 130.536 kb on + strand, within Shew_0119 at 130.616 kb on + strand, within Shew_0119 at 130.646 kb on - strand, within Shew_0119 at 131.161 kb on + strand, within Shew_0120 at 131.258 kb on - strand, within Shew_0120 at 131.404 kb on - strand, within Shew_0120 at 131.452 kb on - strand, within Shew_0120 at 131.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 129,312 + -0.7 129,335 - +0.5 129,392 - -0.0 129,506 + Shew_0118 0.21 +0.5 129,514 - Shew_0118 0.22 +0.2 129,514 - Shew_0118 0.22 +1.4 129,514 - Shew_0118 0.22 -0.6 129,611 + Shew_0118 0.32 -0.4 129,681 + Shew_0118 0.39 -1.2 129,797 - Shew_0118 0.51 -0.8 129,993 + Shew_0118 0.71 -0.4 130,029 + Shew_0118 0.75 -0.5 130,201 - +0.2 130,244 - -0.9 130,246 - -0.6 130,256 - -0.1 130,293 - -0.1 130,485 - Shew_0119 0.38 -2.4 130,509 - Shew_0119 0.42 -0.1 130,536 + Shew_0119 0.47 +0.5 130,616 + Shew_0119 0.61 -0.4 130,646 - Shew_0119 0.67 +0.2 131,161 + Shew_0120 0.21 -0.5 131,258 - Shew_0120 0.34 +0.2 131,404 - Shew_0120 0.53 +0.3 131,452 - Shew_0120 0.60 -0.1 131,803 - -0.2
Or see this region's nucleotide sequence