Strain Fitness in Shewanella loihica PV-4 around Shew_0094

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
105,010	-		Shew_0092	0.64	-0.4
105,010	-		Shew_0092	0.64	-0.1
105,105	+		Shew_0092	0.75	-0.2
105,356	-				+0.4
105,424	+		Shew_0093	0.17	-0.2
105,442	+		Shew_0093	0.20	+0.3
105,481	-		Shew_0093	0.25	-0.7
105,505	-		Shew_0093	0.29	+0.7
105,585	+		Shew_0093	0.41	-0.5
105,593	-		Shew_0093	0.42	-0.1
105,721	-		Shew_0093	0.61	-0.0
105,765	+		Shew_0093	0.67	-0.4
105,773	-		Shew_0093	0.68	-1.4
105,934	+				+0.4
106,087	+		Shew_0094	0.11	-0.4
106,098	+		Shew_0094	0.12	-0.0
106,137	-		Shew_0094	0.15	-0.1
106,265	+		Shew_0094	0.27	-0.2
106,303	-		Shew_0094	0.30	-1.2
106,364	-		Shew_0094	0.36	-0.5
106,407	+		Shew_0094	0.39	-0.2
106,412	+		Shew_0094	0.40	-0.6
106,415	-		Shew_0094	0.40	-0.4
106,415	-		Shew_0094	0.40	-0.9
106,420	-		Shew_0094	0.41	-0.0
106,420	-		Shew_0094	0.41	-0.2
106,607	+		Shew_0094	0.57	-0.1
106,628	-		Shew_0094	0.59	-0.3
106,641	+		Shew_0094	0.61	-0.2
106,641	+		Shew_0094	0.61	+0.6
106,641	+		Shew_0094	0.61	-0.8
106,909	+		Shew_0094	0.85	-0.1
106,975	-				-0.2
107,052	-				-0.8
107,096	-				+0.2
107,101	-				-0.1
107,121	+				+3.3
107,147	+				+1.6
107,215	-				+0.3
107,351	-		Shew_0095	0.47	-0.3
107,351	+		Shew_0095	0.47	+0.0
107,429	+		Shew_0095	0.69	+0.2
107,429	+		Shew_0095	0.69	+0.4
107,429	+		Shew_0095	0.69	-1.0
107,437	-		Shew_0095	0.71	-2.0
107,437	-		Shew_0095	0.71	+0.2
107,437	-		Shew_0095	0.71	+0.3
107,437	-		Shew_0095	0.71	-0.6
107,437	-		Shew_0095	0.71	+0.0
107,513	+				-0.3
107,731	-				-2.8
107,775	-		Shew_0096	0.15	-2.3
107,789	+		Shew_0096	0.18	-0.8
107,797	-		Shew_0096	0.20	+0.2
107,797	-		Shew_0096	0.20	+0.2
107,811	-		Shew_0096	0.22	+0.0
107,818	-		Shew_0096	0.23	-0.3
107,837	+		Shew_0096	0.27	-0.5