Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4217

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4216 and Dshi_4217 are separated by 3 nucleotidesDshi_4217 and Dshi_4218 are separated by 126 nucleotides Dshi_4216: Dshi_4216 - ABC-1 domain protein (RefSeq), at 63,812 to 65,134 _4216 Dshi_4217: Dshi_4217 - transcriptional regulator, LacI family (RefSeq), at 65,138 to 66,145 _4217 Dshi_4218: Dshi_4218 - hypothetical protein (RefSeq), at 66,272 to 67,225 _4218 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1at 64.391 kb on - strand, within Dshi_4216at 64.488 kb on - strand, within Dshi_4216at 64.510 kb on + strand, within Dshi_4216at 64.520 kb on + strand, within Dshi_4216at 64.590 kb on - strand, within Dshi_4216at 64.612 kb on + strand, within Dshi_4216at 64.636 kb on - strand, within Dshi_4216at 64.705 kb on + strand, within Dshi_4216at 64.713 kb on - strand, within Dshi_4216at 64.758 kb on + strand, within Dshi_4216at 64.758 kb on + strand, within Dshi_4216at 64.841 kb on - strand, within Dshi_4216at 64.900 kb on + strand, within Dshi_4216at 65.032 kb on + strandat 65.055 kb on + strandat 65.085 kb on - strandat 65.143 kb on - strandat 65.179 kb on - strandat 65.320 kb on + strand, within Dshi_4217at 65.659 kb on - strand, within Dshi_4217at 65.747 kb on + strand, within Dshi_4217at 66.109 kb on - strandat 66.321 kb on - strandat 66.631 kb on - strand, within Dshi_4218at 66.647 kb on - strand, within Dshi_4218at 66.686 kb on - strand, within Dshi_4218at 66.753 kb on - strand, within Dshi_4218at 66.837 kb on + strand, within Dshi_4218at 66.856 kb on - strand, within Dshi_4218at 67.047 kb on - strand, within Dshi_4218

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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64,391 - Dshi_4216 0.44 +1.2
64,488 - Dshi_4216 0.51 +0.3
64,510 + Dshi_4216 0.53 +0.9
64,520 + Dshi_4216 0.54 -1.9
64,590 - Dshi_4216 0.59 -0.5
64,612 + Dshi_4216 0.60 -0.7
64,636 - Dshi_4216 0.62 -0.1
64,705 + Dshi_4216 0.67 -0.1
64,713 - Dshi_4216 0.68 -0.1
64,758 + Dshi_4216 0.72 +0.9
64,758 + Dshi_4216 0.72 -0.7
64,841 - Dshi_4216 0.78 +0.1
64,900 + Dshi_4216 0.82 -0.1
65,032 + +0.5
65,055 + -0.1
65,085 - +1.7
65,143 - -1.7
65,179 - -0.5
65,320 + Dshi_4217 0.18 -0.6
65,659 - Dshi_4217 0.52 -1.4
65,747 + Dshi_4217 0.60 -1.1
66,109 - -2.1
66,321 - +0.6
66,631 - Dshi_4218 0.38 -1.4
66,647 - Dshi_4218 0.39 -1.1
66,686 - Dshi_4218 0.43 -0.5
66,753 - Dshi_4218 0.50 +0.7
66,837 + Dshi_4218 0.59 -0.3
66,856 - Dshi_4218 0.61 -0.1
67,047 - Dshi_4218 0.81 +0.1

Or see this region's nucleotide sequence