Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4186

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4185 and Dshi_4186 are separated by 87 nucleotidesDshi_4186 and Dshi_4187 overlap by 4 nucleotidesDshi_4187 and Dshi_4188 are separated by 13 nucleotides Dshi_4185: Dshi_4185 - GntR domain protein (RefSeq), at 31,537 to 32,229 _4185 Dshi_4186: Dshi_4186 - ABC transporter related (RefSeq), at 32,317 to 33,138 _4186 Dshi_4187: Dshi_4187 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 33,135 to 33,890 _4187 Dshi_4188: Dshi_4188 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 33,904 to 34,665 _4188 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2 3at 31.427 kb on + strandat 31.446 kb on + strandat 31.502 kb on - strandat 31.678 kb on + strand, within Dshi_4185at 31.847 kb on - strand, within Dshi_4185at 32.014 kb on + strand, within Dshi_4185at 32.066 kb on - strand, within Dshi_4185at 32.389 kb on - strandat 32.431 kb on - strand, within Dshi_4186at 32.582 kb on + strand, within Dshi_4186at 32.724 kb on - strand, within Dshi_4186at 32.954 kb on - strand, within Dshi_4186at 33.036 kb on - strand, within Dshi_4186at 33.081 kb on + strandat 33.148 kb on + strandat 33.372 kb on + strand, within Dshi_4187at 33.401 kb on - strand, within Dshi_4187at 33.403 kb on - strand, within Dshi_4187at 33.474 kb on + strand, within Dshi_4187at 33.482 kb on - strand, within Dshi_4187at 33.482 kb on - strand, within Dshi_4187at 33.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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31,427 + +1.5
31,446 + -0.1
31,502 - -0.2
31,678 + Dshi_4185 0.20 +2.7
31,847 - Dshi_4185 0.45 -0.1
32,014 + Dshi_4185 0.69 -0.5
32,066 - Dshi_4185 0.76 +1.5
32,389 - -0.6
32,431 - Dshi_4186 0.14 -0.1
32,582 + Dshi_4186 0.32 -1.8
32,724 - Dshi_4186 0.50 -1.1
32,954 - Dshi_4186 0.77 -1.1
33,036 - Dshi_4186 0.87 -0.7
33,081 + +0.1
33,148 + +0.5
33,372 + Dshi_4187 0.31 +0.6
33,401 - Dshi_4187 0.35 -0.1
33,403 - Dshi_4187 0.35 -0.4
33,474 + Dshi_4187 0.45 +2.9
33,482 - Dshi_4187 0.46 -0.7
33,482 - Dshi_4187 0.46 +0.9
33,852 + +0.9

Or see this region's nucleotide sequence